Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04670 488 / 6e-162 Enhancer of polycomb-like transcription factor protein (.1) AT4G32620 170 / 2e-43 Enhancer of polycomb-like transcription factor protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235900 [exp] 1115 / 0 AT5G04670 518 / 2e-173 Enhancer of polycomb-like transcription factor protein (.1) Potri.006G246200 [exp] 185 / 2e-48 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.018G034900 [exp] 179 / 2e-46 AT4G32620 613 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.014G000600 [exp] 50 / 4e-06 AT1G79020 561 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028841 [exp] 566 / 0 AT1G66950 1374 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10008985 [exp] 389 / 1e-123 AT5G04670 325 / 2e-99 Enhancer of polycomb-like transcription factor protein (.1) Lus10041252 [exp] 181 / 1e-46 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10021959 [exp] 161 / 2e-40 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10033318 [exp] 51 / 2e-06 AT1G79020 586 / 0.0 Enhancer of polycomb-like transcription factor protein (.1) Lus10034778 [exp] 50 / 7e-06 AT1G79020 577 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10513 [poplar] [flax] EPL1 Enhancer of polycomb-like
Representative CDS sequence Show only first row Show all	>Potri.008G024300.7 pacid=42808313 polypeptide=Potri.008G024300.7.p locus=Potri.008G024300 ID=Potri.008G024300.7.v4.1 annot-version=v4.1 ATGCCGTCGGTGGGGTTGCGAAGGACGACGAGGGTGTTTAGCGTGGTTAAAGGTGTCGATGGAGCCCGGGTTCTGCGGTCTGGGCGGCGTTTATGGCCAG AATCCGGTGATGGAAAGCTCAGGAGAAGCAGTGATGGGGACGAGTTGTATCAGACAATAATCAAGAACACCAACAACCATATCAAGAATCAAAATAGCAA TAGTAATCTTAAGTACAAGGAGAATAATGGGTGGACCCATGATGTTAAACTGAAAAAAGATCGAGGTATTGTCATTGCCATTGCAGCTCCAAAGAAAATT AAGAGGGTAAAGAGTGAGAAGGAGAAATTTGGAATTGTTTATAGTAGGAAAAGGAAGAGACTTGGTGGTGAGAAGAGCGAAAACCCCGAGGATAAAAAGT TTGGGATTCAGTTTTCACGTAGGCAGCGAAGGAGGGAGGGCAGTGAGAGCCAGGAGAGTCTTGTGTGTACTCCTCAGCTTGTCGCCTTAGTTGAGGGTTG TAGTAGTAGTAATGGTTGGTTGTCTTGTTTTTTGAGTTCAGTTTTGGGGCATGCCATGAGAGTCAGTTTGAGTCTTTCTGAGCTTGCTGATTTTCTCTTG TCGGATCCAATTAGCAGTGTTTTTGCCTCAAATGGACTACATTTTGTGCGGGACCTTCCTTCTGATAGAATTGGAATTTGCAAGTTTTTCGAGACTAGGC AGCTTCTGCCGATGTTTTCTGTGGATTTTTCTGCAATCCCTTCATGTTTTGCGTTCATGCATCTCAGTTTGTTTGTTAAGTTTAGATGTCTGTCTCTTAT ACCTGTAAATAACTCGGTGGATGGGGATGATGATGATGATGAAATCATGAGTGAAAGTAAAGGAGATCAATCATGCACGTCCACAAAGACTGATTTCACT CAGAAAATTACAGTTGTGCCCAAAACTGATAGTTATGGGTGTAGGGTGGTGTTACATCCATCTGTTAGAGCTTCCAAGTTGACTGGTCGAAACACCCAGC ACAGAAATGGATTAAATTCCCGTGGTATTCAGAAAAGGAGGAGCTCACTCAGGAGAGGGAGACCTAGAAATTCTTCCATAGGTGGCTTGCACAAAGCTAA TGGTGCTCTAGTTTCTGATTTAATTAGTAGTAGGAAAATTGGCATCCCTTTCTCCTCTGTTGTGTCTAAGGAAAAGCTTAGAAGGTCAATTCAAAGTAGC CCTGCAGCAAGCATCAAAGAACTGAATTGTGCTGCAGTTGGAGTAAAGAAGGGCATGAACCTATCTAGCTGCTCTGCAAATATTCTGATTACTGAAACAG ACAGATGTTATAGGATAGAAGGGGCCACTGTCATGTTAGAATTTACTGATTCAAAGGAGTGGGTGCTTGTGGTTAAGAAAAATGGGTTAACTCGATACTC TCACCTGGCTCAGAAAATTATGAGGACTTGTGTTTCGAACCGTTTCACTCATGATATAATTTGGAATGGGGATGACAACTGGAAACTAGAATTCCCAAAC AGACAGGACTGGTTCATTTTCAAGGAATTGTACAAGGAATGCTCTGATCACAATGTTCCTGCTTCTGTTTCAAAGGCCATACCTGTCCCTGGAGTAAGGG GAGTGTTAGACAATGGTGATTGTGGCAGTGCTCCCTTTTCTAGACCATATGCATACATCTCTTCTAATAATGATGAGGTAGCTAGAGCTTTGTCAAGGAG CACGGCAAGTTATGACATGGATTCTGAAGATGAGGAATGGCTTAAGAAGTACAATAAAGAGTTTTTAGCAGAATCTGATCATCTTTCGGAGGATAACTTT GAGTTGATGATCGATGCCCTTGAGAGGTCATATTTCTGTGATCCAGATGACTTCACTGATGAGAGTGCAGCAGCGAAATATTGTAAGGATTTTGGTAGAA GGGAATTGGCTAAAGCTGTGTATGGCTACTGGATGAAAAAACGGAAGCAGAAACGATCACCACTGCTTCGGGTTTTTCAGGGACATCAAGCAAAGAAAAC CCCACTGATTCCGAAACCTGTACTGCGTAAGAGAAGGTCATTCAAACGACCTCCCAGTCAGTTTGGAAGAGGCAAGCAACCAAGTCTATTGCAAGCAATG GCAGCTGAAAAAGATGCTTTGCATAGTGCCTTGCGTAAAGTTGAAGAAGCCAGAAATTCAGTGAAAAGATCTGTAGAAGCCGCCATGCTCAAGCGTCAAA AGGCACAGTTGCTCATGAAGAATGCAGATTTGGCAACCTTCAAAGCTGCAATGGCGCTTAAAATTGCTGAAGCTGCTCTTGCTGCCAGCTCAACAGATGT CGCTGTCACTCACTTTTGCGATTGA
AA sequence Show only first row Show all	>Potri.008G024300.7 pacid=42808313 polypeptide=Potri.008G024300.7.p locus=Potri.008G024300 ID=Potri.008G024300.7.v4.1 annot-version=v4.1 MPSVGLRRTTRVFSVVKGVDGARVLRSGRRLWPESGDGKLRRSSDGDELYQTIIKNTNNHIKNQNSNSNLKYKENNGWTHDVKLKKDRGIVIAIAAPKKI KRVKSEKEKFGIVYSRKRKRLGGEKSENPEDKKFGIQFSRRQRRREGSESQESLVCTPQLVALVEGCSSSNGWLSCFLSSVLGHAMRVSLSLSELADFLL SDPISSVFASNGLHFVRDLPSDRIGICKFFETRQLLPMFSVDFSAIPSCFAFMHLSLFVKFRCLSLIPVNNSVDGDDDDDEIMSESKGDQSCTSTKTDFT QKITVVPKTDSYGCRVVLHPSVRASKLTGRNTQHRNGLNSRGIQKRRSSLRRGRPRNSSIGGLHKANGALVSDLISSRKIGIPFSSVVSKEKLRRSIQSS PAASIKELNCAAVGVKKGMNLSSCSANILITETDRCYRIEGATVMLEFTDSKEWVLVVKKNGLTRYSHLAQKIMRTCVSNRFTHDIIWNGDDNWKLEFPN RQDWFIFKELYKECSDHNVPASVSKAIPVPGVRGVLDNGDCGSAPFSRPYAYISSNNDEVARALSRSTASYDMDSEDEEWLKKYNKEFLAESDHLSEDNF ELMIDALERSYFCDPDDFTDESAAAKYCKDFGRRELAKAVYGYWMKKRKQKRSPLLRVFQGHQAKKTPLIPKPVLRKRRSFKRPPSQFGRGKQPSLLQAM AAEKDALHSALRKVEEARNSVKRSVEAAMLKRQKAQLLMKNADLATFKAAMALKIAEAALAASSTDVAVTHFCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	0	1
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	1.41	0.9006
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	2.00	0.9168	APG9.1
AT5G38690			Zinc-finger domain of monoamin...		Potri.006G257400 [exp]	4.79	0.8316
AT2G39950			unknown protein		Potri.008G064500 [exp]	5.19	0.8538
AT1G03910			unknown protein		Potri.006G118700 [exp]	5.65	0.8623
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.002G189700 [exp]	5.65	0.8396
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	7.48	0.8665
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	7.74	0.8867
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	9.74	0.8716
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	9.79	0.8706

Compare expression of checked genes

Potri.008G024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.