Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66950 2011 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1997 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G15520 1671 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G59870 1615 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 1615 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1593 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT2G26910 1532 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G29940 1488 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1415 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1410 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115000 [exp] 2137 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.009G147100 [exp] 1788 / 0 AT2G36380 1759 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Potri.001G048700 [exp] 1765 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1751 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 1744 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1735 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1732 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1731 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 1731 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008984 [exp] 2028 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10041668 [exp] 1731 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10006277 [exp] 1727 / 0 AT1G66950 1791 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10024061 [exp] 1707 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10020568 [exp] 1694 / 0 AT1G66950 1761 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10024060 [exp] 1674 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1672 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10025824 [exp] 1626 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10014150 [exp] 1624 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10014384 [exp] 1618 / 0 AT1G66950 1917 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated CL0181 [poplar] [flax] PF14510 [poplar] [flax] ABC_trans_N ABC-transporter N-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G024400.1 pacid=42808090 polypeptide=Potri.008G024400.1.p locus=Potri.008G024400 ID=Potri.008G024400.1.v4.1 annot-version=v4.1 ATGGTTGAGGCTTTTGCTGGTAGACATGACCTTGCAAGGTCAATGAGGTCGCTGAGCACAAGGTCTCCGAGCATGAGGAGTTTATCATCAGCAAGTAAAA GAAATTGGGCCTCAGCGAGTATTCGCGAGGTGTGGGTGAATCAAGGAGATATGTTTCAAAAGAGTGGGAGAGAGGAAGATGAAGAGGAGCTTAAATGGGC TGCAATCGAGAGACTGCCTACATATGATCGGTTGAGAAAAGGCATGCTCAAACAGGTTAGGGATAGTGGAAGTGTTCGCTATGAAGAGTTTGATGTTGCC AATCTAGATGTTCACGGCAGGAAGCAGCTCATAGAGAGTATACTCAAGGTTGCTGAAGAGGACAATGAGATATTTCTTCGTAAGCTGAGGGAAAGGACTG ATAGGGTGGGAATTGTCACTCCCAAGATTGAAGTCCGGTTCGAGCATTTGTCTGTCGAAGGAGATGCATATGTTGGAACCAGGGCACTTCCAACTCTAGT GAATGTTGCTGTGAACAAAATAGAGGGACTTCTGGGTTTTTTGAGGCTTTCCCCGTCTAAGAAAAGAGTAGTCAACATTCTCCATGATGTGAGCGGAATA GTGGAACCAATGAGGATGACCCTGCTTCTAGGACCTCCAGGGTCAGGCAAAACTACATTGCTACAGGCACTTTCAGGAAAGAGGGACAGGGAGCTCAGGG TATCTGGAAAAGTCACCTACTGTGGACATGAATTGCATGAGTTTGTTCCTCAGAGAACATGTGCTTATATAAGCCAGCATGATCTTCATCACGGTGAGAT GACAGTCAGAGAGACACTGGACTTTTCAGGGCGCTGTTTGGGTGTTGGAGCCAGATATGAGTTGTTGGCAGAGTTGTTGAGAAGAGAAAAGGAAGCTGGG ATAAAACCAGATCCTGAGATAGATGCATTCATGAAAGCGATAGCAATGGAAGGCCAGGAAGCTAGTCTAGTTACAGACTATGTTCTCAAGATTCTTGGAA TGGATATCTGTGCTGATATCACGGTGGGTGATGACATGAGAAGAGGTATATCCGGCGGTCAAAAGAAGCGTGTTACTACAGGAGAGATGTTGGTTGGACC AGCAAAAGCTCTTTTCATGGATGAAATATCAACTGGTTTGGACAGTTCAACAACTTACCAAATTGTCAAATTTATGAGGCAAATGGTTCACATCCTGGAT GTCACCATGATAATTTCTCTTCTACAACCTGCACCTGAGACGTATGACCTTTTCGATGACATTATTTTACTCTCAGAAGGTCAGATTGTTTACCAAGGTC CACGTGAAGAAGTACTTGAATTCTTCGAAAGTGTTGGTTTCAAGTGCCCAGAAAGAAAAGGAGTTGCAGATTTCTTGCAAGAGGTAACATCAAAGAAAGA CCAAGAGCAGTACTGGAGCAAAAGGCATGAACCTTATCGATATGTATCGACACTTGAGCTTGTGAACTGCTTCAAGTCTTTCCGCACAGGCCAAAGAGTC TCTGAACAGCTTAGAATTCCGTATGATAAATCTACTGCCCATCCGGCTGCATTAGTGAAAGATGAGTATGGAATCTCCAATATGGAACTCTTTAAGGCAT GCTTTTCGAGAGAGTGGTTATTGATGAAGCGCAGCTCTTTTATCTATATTTTCAAGACAACCCAGATCACTATCATGGCACTCATTGCCATGACAGTGTT CTTAAGAACTGAAATGACAGTTGGCACTGTGGAAGGTGGAGGAAAATATTACGGTGCGCTGTTCTTTAGTCTCATTAACGTAATGTTCAATGGGATGGCA GAGATGGCGATGACTACGACTCGGCTTCCTGTATTTTTCAAACAAAGGGATTTCAAATTCTATCCAGCATGGGCTTTTGCATTACCAATATATCTGCTGA GGATCCCTGTCTCCTTGTTGGAGTCTGGGATATGGATCTTGCTCACATATTACACCATTGGTTTTGCTCCTGCTGCTAGCAGGTTTTTCAAACAATTTCT AGCATTCTTCAGTGTGCATCAGATGGCTCTCTCTCTCTTCCGTTTCATTGCTGCAGTTGGAAGAACAGAAGTTGTGTCAAGCACCCTTGGCACCTTTACA TTGCTTGTGGTTTTTGTCCTCGGTGGATTCATCGTCTCCAAAGATGATATTGGACCCTGGATGATCTGGGGCTACTATATTTCTCCCATGATGTATGGGC AGAACGCCATAGTCCTGAACGAATTTCTTGACGATAGATGGAGTGTTCCAAATCAGGACAAAGCATTTTCTGAACCCACAGTTGGAAAGGTTCTTCTCAA AATGAGAGGCATGTTTATGGAAGAATATTGGTATTGGATTTCTGTTGGGGCACTTCTTGGATTTGCTATGCTTTTTAATGTCCTTTTCGTAGCGGCACTG ACTTATTTGGATCCTTTGGGAGACTCTAAATCCATTATTCTGGATGAGGATGAGACTAAGAAGTCATCCTCCACTGGAAAGCAAAATATTAAGGCCATAG AAATGACTCCAGCATCTGCTTCCCAATTCACTGAAGAGAAAGCACCTAAGCAACGCGGAATGGTGTTGCCCTTTCAGCCGTTGTCACTTGCATTTAATCA TGTTAATTACTATGTCGATATGCCTGCAGAAATGAAAATGCAAGGAATCAAAGAGGATCGCCTCCAGCTGTTACGAGATGTTAGTGGTGCTTTCAGACCT GGTGTTCTAACAGCGTTGGTTGGGGTGAGTGGTGCTGGAAAAACCACTTTGATGGATGTTCTAGCAGGTCGGAAAACTGGAGGGTACATTGAAGGAGGTA TCAGCATTTCTGGTTATCCAAAGAAGCAAGAAACTTTTGCTCGGGTTAGCGGTTACTGTGAGCAGAATGATATCCATTCTCCATATGTTACTGTATACGA ATCACTCCTGTACTCTGCTTGGTTGCGTCTCGCCAAGGAAATTAATGAGGATACAAGAAAGATGTTTGTTGAGGAAGTCATGGATTTGGTTGAGCTGAAC ACACTAAGGAATTCTATGGTAGGACTTCCAGGGATAGATGGTTTGTCGACTGAGCAGAGAAAGCGACTCACTATAGCAGTAGAATTAGTTGCTAATCCAT CCATCATTTTCATGGATGAACCAACATCAGGCCTTGATGCTAGAGCTGCTGCAATTGTTATGCGTACAGTGAGAAATACAGTGGATACAGGCCGAACTGT AGTCTGCACAATTCACCAACCAAGCATAGATATTTTCGAAGCTTTTGATGAGCTACTTCTGATGAAGAGAGGAGGACAAGTCATTTATGCAGGATCCCTC GGTCATGAGTCTCACAAGCTCATAGAATACTTTGAGGCTGTACCAGGGGTTCCTAAGATCAAAGATGGTTATAATCCTGCTACATGGATGCTGGAGATCA GTTCAACTGCAGTCGAAGCTCAACTCAAAGTAGACTTTGCAGAAATTTATGCTCAGTCTGAACTCTACCAGTCAAATCAGGAATTAATTGAAGAACTAAG CAAACCAGAACCAGGATCTAAGGACCTTTACTTCCCGACACAATACTCGCAGGACTTCTTTACACAATGCAAGGCATGCTTCTTGAAACAGAAATGGTCT TACTGGAAGAACCCAAGATATAACACTATGCGGTTTTTCATGACATTGACTATCGGTCTTATATTTGGACTTATTTTCTGGAACCAAGGGCAAAAGATAA ACAAGCAACAAGATCTCTTCAATTTGCTTGGAGCAATGTATTCTGCAGTCATTTTCCTGGGAGCCACCAACACTTCCTCAGTGATGTCAATTGTGTCGAT AGAAAGAACAGTCTTCTACCGTGAAAGAGCTGCTGGAATGTACTCTGAACTGCCTTATGCATTTGCTCAGGTTGCCATTGAGGGAATTTATGTTGCAATC CAAACTATGGTCTATAGTATATTGCTCTATGTCATGATTGGATTCTCCTGGGAATTTACAAACTTCTTGTGGTTCTATTTCTTCATATTCACTGCCTTCA TGTACTTCACACTTTACGGGATGATGCTTGTTTCTCTCACTCCTGGCCATCAAATTGCTGCAATTGTTATGTCGTTCTTCTTGAGTTTCTGGAACCTGTT CTCTGGCTTCCTTGTCCCGAGAACGCAAATTCCTCTCTGGTGGAGGTGGTACTACTGGGCTTCTCCAGTCTCTTGGACAATCTATGGCCTCATTACCTCC CAGGTGGGCAACCTCAAAAAAATGATTGAGATACCTGAAGTTGGTCCTGTCGCAGTAAAGGACTTCCTCAAGGCACGCTTAGGATTTGAATATGACTTCC TAGGAGCCGTTGCAGCAGCCCATATTGGTTTTGTTGTACTCTTCTTGTTTAGCTTTGCCTACGGAATTAAGTACTTGAATTTCCAAAGAAGATAG
AA sequence Show only first row Show all	>Potri.008G024400.1 pacid=42808090 polypeptide=Potri.008G024400.1.p locus=Potri.008G024400 ID=Potri.008G024400.1.v4.1 annot-version=v4.1 MVEAFAGRHDLARSMRSLSTRSPSMRSLSSASKRNWASASIREVWVNQGDMFQKSGREEDEEELKWAAIERLPTYDRLRKGMLKQVRDSGSVRYEEFDVA NLDVHGRKQLIESILKVAEEDNEIFLRKLRERTDRVGIVTPKIEVRFEHLSVEGDAYVGTRALPTLVNVAVNKIEGLLGFLRLSPSKKRVVNILHDVSGI VEPMRMTLLLGPPGSGKTTLLQALSGKRDRELRVSGKVTYCGHELHEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGARYELLAELLRREKEAG IKPDPEIDAFMKAIAMEGQEASLVTDYVLKILGMDICADITVGDDMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVKFMRQMVHILD VTMIISLLQPAPETYDLFDDIILLSEGQIVYQGPREEVLEFFESVGFKCPERKGVADFLQEVTSKKDQEQYWSKRHEPYRYVSTLELVNCFKSFRTGQRV SEQLRIPYDKSTAHPAALVKDEYGISNMELFKACFSREWLLMKRSSFIYIFKTTQITIMALIAMTVFLRTEMTVGTVEGGGKYYGALFFSLINVMFNGMA EMAMTTTRLPVFFKQRDFKFYPAWAFALPIYLLRIPVSLLESGIWILLTYYTIGFAPAASRFFKQFLAFFSVHQMALSLFRFIAAVGRTEVVSSTLGTFT LLVVFVLGGFIVSKDDIGPWMIWGYYISPMMYGQNAIVLNEFLDDRWSVPNQDKAFSEPTVGKVLLKMRGMFMEEYWYWISVGALLGFAMLFNVLFVAAL TYLDPLGDSKSIILDEDETKKSSSTGKQNIKAIEMTPASASQFTEEKAPKQRGMVLPFQPLSLAFNHVNYYVDMPAEMKMQGIKEDRLQLLRDVSGAFRP GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGGISISGYPKKQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLAKEINEDTRKMFVEEVMDLVELN TLRNSMVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGSL GHESHKLIEYFEAVPGVPKIKDGYNPATWMLEISSTAVEAQLKVDFAEIYAQSELYQSNQELIEELSKPEPGSKDLYFPTQYSQDFFTQCKACFLKQKWS YWKNPRYNTMRFFMTLTIGLIFGLIFWNQGQKINKQQDLFNLLGAMYSAVIFLGATNTSSVMSIVSIERTVFYRERAAGMYSELPYAFAQVAIEGIYVAI QTMVYSILLYVMIGFSWEFTNFLWFYFFIFTAFMYFTLYGMMLVSLTPGHQIAAIVMSFFLSFWNLFSGFLVPRTQIPLWWRWYYWASPVSWTIYGLITS QVGNLKKMIEIPEVGPVAVKDFLKARLGFEYDFLGAVAAAHIGFVVLFLFSFAYGIKYLNFQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.008G024400 [exp]	0	1
AT1G16250			Galactose oxidase/kelch repeat...		Potri.011G046100 [exp]	6.00	0.9430
					Potri.015G120600 [exp]	8.94	0.9358
AT1G09560		GLP5	germin-like protein 5 (.1)		Potri.009G157100 [exp]	9.69	0.9419	Pt-GER2.21
AT4G08250	GRAS		GRAS family transcription fact...		Potri.019G007100 [exp]	10.09	0.9373
AT3G61680			alpha/beta-Hydrolases superfam...		Potri.014G097200 [exp]	11.13	0.8338
					Potri.006G180650 [exp]	12.64	0.9352
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.001G142900 [exp]	13.19	0.9347
AT1G56140			Leucine-rich repeat transmembr...		Potri.018G132900 [exp]	19.62	0.9328
					Potri.015G120500 [exp]	21.49	0.9059
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048100 [exp]	24.37	0.9092

Compare expression of checked genes

Potri.008G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.