Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 129 / 4e-31 unknown protein AT1G78810 60 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235700 [exp] 1575 / 0 AT3G22430 125 / 4e-30 unknown protein Potri.009G147201 [exp] 224 / 5e-60 AT3G22430 148 / 3e-37 unknown protein Potri.008G152900 [exp] 145 / 1e-36 AT3G22430 409 / 2e-138 unknown protein Potri.010G087400 [exp] 137 / 5e-34 AT3G22430 418 / 3e-142 unknown protein Potri.001G037101 [exp] 55 / 3e-07 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.011G109600 [exp] 45 / 0.0003 AT1G78810 103 / 5e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020567 [exp] 219 / 8e-63 AT3G22430 129 / 8e-33 unknown protein Lus10006278 [exp] 221 / 3e-60 AT3G22430 132 / 2e-32 unknown protein Lus10021918 [exp] 104 / 1e-23 AT3G22430 298 / 6e-97 unknown protein Lus10041203 [exp] 58 / 1e-09 AT3G22430 186 / 2e-57 unknown protein Lus10026076 [exp] 46 / 0.0002 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G024500.1 pacid=42806061 polypeptide=Potri.008G024500.1.p locus=Potri.008G024500 ID=Potri.008G024500.1.v4.1 annot-version=v4.1 ATGCAATCTAGGAGGAAAGAAGATTACGTGACACAGTCGCCATCTTCAAAGATACGTAATCCACATAGAACTGATATAGGGCATGAGTCTCATCCTGCTC CTCGCCATAATGCAGTGGATCGGTCTCCACGCGTGCAGCAGCGAAGGAGTTTAAGCCCTCGTAGTAAGGTTGAGGTTTCTAGAAGGGTAGTTCAAGGGGA GGGAAGGAGCAGTTCAACTGAAAAAAGGGACTATGGTTGGCATTTGGGTGCAGGTAGGACTGAAAAAGTCCGGCCTGGTTCCCCACAATATGCGCAAGAG CATAGAAAGCCTCATTCCGACGACGGGGTTGTGCATAGGAAGTACAGGCAAGTTGAGGATATGGATTATGATGATGGTAAAAGTAATAGATTGAAGCGAG GATATGATCATCATGCTGCACCTTCTAGAGTGAATAAAGAAAAGGATTATCGTGAAAGCAGGGCTGTGGGTATTGATGGGCATGGCATGTTGGGGCAGAA ATCAGTGCCCATGGAAGATGGTTTGGTAAGAGGGCCATATCGGGTGCCTCCAGATTTGGTTCCCAACTCATCTTATGGAGATACTGGGGCGCATATACAG TCAATGTCCCGGGGTATGGATATTGGCCACTTTGAGGATGCGGAACTTCGATTTCGAGAGCCTATACCATCAGATAAGATTCCAGTCAGGGATTTTTATG AAGAAGAGGAAAGACCCATGTTTCATTCTAGAAATGTTCCATACACCAGGATGCCAGCTCCTCATTCTAAGGATTTGGAAAGCACTTCTCGTTTTGAAAA TTTTGCTGGTTCATCTTCTGGATTCTCAAGGAGTGAGTTCCCAAGTTCGTATAGAGAAGGCATGCCTCTAGCTGAATCAGATGAATATCCAAGGAGCAGC ATGAAACTCACAGAACCTATGGATTTTAACGCATATAGGGAAAGGCCAGTTATGGACATAAGAGACCGAGAGGCTGGTAAGAGAATTATTACGAGTTATC CTCAGGGTGCCTATAATACTAAAAGGGTCTCACATGATCATTACCTTTACTCCAGGTCACAAGGAACTGTGAATGACGATCATGCATATCTATCTGATGA CATACACAGAATGATGTCCCCACCTTCTCCATTGGACTATGAGCATGCTCGAATAGATTATGAGCATAGAGAATTTTCAAGGCTGAGTATGCACCCTGTT AGAGACAGGACTGAGCATGCTGAGGGTTCCTATATAAACATGAGAAGGAGCACTGTATTTGATCATCCTACAATACAAAAGCAAGCACCTATGGAGAACC TTGATGCAGGCAGAATACAACATGCATCAAAATACAATGCAGAATATTTGGGCTCTGCATATACCCGAGTTGAGTTTGGACAGGGGGAGTTACAAGATAA TAGGAAATCTCATTTGGGTGTCACACAGAATCACCAAATCCCACATTCGAGGTCAAATTATGGGTTCGGACGAGATGCAGGTCCACAGTTTCAAAAGGAA ACATTGGACAATACTCCTATGCCATTATATGACCTGGAAAGGCTTGCTGCCAAGAGGCAAAGGACGAGGGTAGAGCTTGCCATATACAAGCCATCAGATA AAGCATTCAAGCAGAAGTATGTAATGGAGGAAGAAATAAATAGGCATGACAGAAAGTACGTTGTGGAGGAAGATATAAATAGGCATGATACAAGAAATAT TGTGTCAAACAAATGGAATGCACCTCAAGAATTTGAAGATGTTTATGAAACAGGCGAGGAATGGGTAAATGAAAATGCAGGTGATTTACATGTATCCAGG ACTCAGAGGTTTTATCAGAGTGCATATAGAAATGCTAAAAGGACATATGACAGGCAAGATATTCTTGGAGATTCTGCATCTGAAGACTGGTTGTCTTCTC AAGCTTCTTTGTCACCTGCACGAAGGCATTCCATTAGACATTATAAACCTGGTGCTAAATATATGAACGGTCATCCAAGATCTGGTCCTTTAAGCTGGTA TAACTCGCACCAGACTGATAGAAAAAGTGGTGTTCATAGACAGCATAGGATTTGGAAAAGAAATGATGATTTTGGCGAGGATGCAAATGTAATTGATGAT GACCAGTCAGAAGAATGGGTGAATCTTGGGGAGGCTGAACCACCTGAGGGCTCAGAGGAATTCAAGCAACTGGTGGATGAAGCCTTCTTGCTGTACTCTA AAAGATTAAATTTGAACTCTGCAGTTCAGAGAAGATACAAGGAGCAAGGAAAAGCTGGTAGTTTGTTCTGCATCGTTTGTGGCAAAAGCTCATCAAAGGA GTTCATGGCTGCCCAGAACCTGGTACAGCATGCCTTTATGTCTCACAAGATTGGGCTGAGAGCCCAGCACTTGGGTCTTCACAAAGCAATATGTGTTTTG ATGGGGTGGAATAGTTCCGTGCCTTGTGATGCAATAACATGTGTTCCTGAGATCTTGCCTGCTGAAGAAGCTGTTGCTCAGAAAGAGGATTTGATGCTCT GGCCTCCACTTGTTGTTATCCACAACATTTCTATGTCGAACAACAACCCAGAACATCAGAAGGTCGTACCTATTGAAGGGGTGGAGGCTTTTCTGAGAGG TAAAGGTATTGTTGGGGGTAAAATCAAGGTATGCCTAGGAAAACCTGCCGACCAAAGCATTATGTTGGTAAAGTTTTTGGGAACTTTTACTGGACTTGGA AATGCAGAGAAGCTTCACAAATATTTTGCTGAGAAGAAACATGGGAGAGAAGAATTTGAGCATAAAACATCCAACAATGGTAACAACATCAGTAGTTCGA AAGAAGAAACTCAAGGAGGCGGCAAGTTGGAGGAGCAACTACTATATGGGTACCTGGGAATTGCTGAGGACTTGGACGGGCTTGATTTTAATACCAAGAA GTGGATTAAAATAAAGAGCAAGAAGGAAATTCAAGAGCTGGCAAATGCCCCTGTTAAAACTGATGACAAGTTGCTGAATTACTAA
AA sequence Show only first row Show all	>Potri.008G024500.1 pacid=42806061 polypeptide=Potri.008G024500.1.p locus=Potri.008G024500 ID=Potri.008G024500.1.v4.1 annot-version=v4.1 MQSRRKEDYVTQSPSSKIRNPHRTDIGHESHPAPRHNAVDRSPRVQQRRSLSPRSKVEVSRRVVQGEGRSSSTEKRDYGWHLGAGRTEKVRPGSPQYAQE HRKPHSDDGVVHRKYRQVEDMDYDDGKSNRLKRGYDHHAAPSRVNKEKDYRESRAVGIDGHGMLGQKSVPMEDGLVRGPYRVPPDLVPNSSYGDTGAHIQ SMSRGMDIGHFEDAELRFREPIPSDKIPVRDFYEEEERPMFHSRNVPYTRMPAPHSKDLESTSRFENFAGSSSGFSRSEFPSSYREGMPLAESDEYPRSS MKLTEPMDFNAYRERPVMDIRDREAGKRIITSYPQGAYNTKRVSHDHYLYSRSQGTVNDDHAYLSDDIHRMMSPPSPLDYEHARIDYEHREFSRLSMHPV RDRTEHAEGSYINMRRSTVFDHPTIQKQAPMENLDAGRIQHASKYNAEYLGSAYTRVEFGQGELQDNRKSHLGVTQNHQIPHSRSNYGFGRDAGPQFQKE TLDNTPMPLYDLERLAAKRQRTRVELAIYKPSDKAFKQKYVMEEEINRHDRKYVVEEDINRHDTRNIVSNKWNAPQEFEDVYETGEEWVNENAGDLHVSR TQRFYQSAYRNAKRTYDRQDILGDSASEDWLSSQASLSPARRHSIRHYKPGAKYMNGHPRSGPLSWYNSHQTDRKSGVHRQHRIWKRNDDFGEDANVIDD DQSEEWVNLGEAEPPEGSEEFKQLVDEAFLLYSKRLNLNSAVQRRYKEQGKAGSLFCIVCGKSSSKEFMAAQNLVQHAFMSHKIGLRAQHLGLHKAICVL MGWNSSVPCDAITCVPEILPAEEAVAQKEDLMLWPPLVVIHNISMSNNNPEHQKVVPIEGVEAFLRGKGIVGGKIKVCLGKPADQSIMLVKFLGTFTGLG NAEKLHKYFAEKKHGREEFEHKTSNNGNNISSSKEETQGGGKLEEQLLYGYLGIAEDLDGLDFNTKKWIKIKSKKEIQELANAPVKTDDKLLNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22430			unknown protein		Potri.008G024500 [exp]	0	1
AT3G09060			Pentatricopeptide repeat (PPR)...		Potri.016G111600 [exp]	1.41	0.8437
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	3.74	0.8480
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	6.92	0.8373	Pt-ABA3.1
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127300 [exp]	7.34	0.8175
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	7.41	0.8242
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	8.48	0.8402
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	9.38	0.8176
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	12.84	0.8028
AT5G08550		ILP1	increased level of polyploidy1...		Potri.006G020400 [exp]	12.84	0.7757
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	12.96	0.8203

Compare expression of checked genes

Potri.008G024500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.