Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 64 / 2e-11 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 59 / 8e-10 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 59 / 1e-09 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 58 / 2e-09 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G29630 56 / 1e-08 UDP-Glycosyltransferase superfamily protein (.1) AT2G22590 55 / 2e-08 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 55 / 2e-08 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 54 / 4e-08 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 54 / 6e-08 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT1G64920 50 / 5e-07 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024900 [exp] 231 / 2e-73 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 81 / 4e-17 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 68 / 6e-13 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 67 / 1e-12 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 67 / 2e-12 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 64 / 2e-11 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 59 / 8e-10 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 56 / 9e-09 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016500 [exp] 54 / 3e-08 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008955 [exp] 181 / 1e-53 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10028865 [exp] 177 / 2e-52 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10028863 [exp] 155 / 2e-44 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 155 / 4e-44 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 154 / 1e-43 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 135 / 2e-36 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10043446 [exp] 119 / 2e-32 AT2G22590 74 / 3e-15 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 86 / 8e-19 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 74 / 5e-15 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 72 / 4e-14 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G024801.1 pacid=42805978 polypeptide=Potri.008G024801.1.p locus=Potri.008G024801 ID=Potri.008G024801.1.v4.1 annot-version=v4.1 ATGTACGTACTGCAATGCAAGAAAAATTTACAAACAAGAGGGTGCCATAGCCTTATCCCCACACTTCTACTCTTTCTTGTCCATCTAATTATTGGCAAAA TCAAGAAAGAGCAGTACCAAGCCCATATGGATGCCACAAATAGGAGTGTTGTGAGGGTTCTAATGTTTCCATGGTTAGCATATAGTCATATTCATCCTTT CTTGGAGCTAGCCAAGAAGCTTTCTGAGAGAAACTTTTACATTCATCTTTGTTCATCGCCTGCTAACCTTGGCCATATCAAAGAAAACCTACTGGAGATG AACTTCCCTTCAATACAGCTTGTAGAGCTTCATCTTCCATCATCGCCTGACCTTCCTCCTCATTACCACACAACCAAAGGCCTGCCGAATCATCTCCTGG GAAACTTGATGCAAGCATTTGATACGGCAAGCAGTAGCTTCTCCAGCATTTTGACAACATTAAGGCCATATTTTCTTACTTGTGATTTCTTTCAACCATG GGCTCCAGCACTGGCTTTATCACTGAATATCCCAACTGTTCAGTTCGTGGTTAGTGGCAATAAGGCAAATTCTGTTGCAGCTCATGCCTTCAAGAAGTCA GGTGTTGTTATTCAAGATTCTGCGAAAGATTTTCTTTTCATTAAAGACAGAATTCTTCAGCACCTGGAACAATCCTCTGGAATCATGTTGGTCAGGAGTT TGAGAGAGATTGAGGGAAAATACTTAGATGATCTTTCAGCTGTAACCATGAAGAGGGTTTTGCCAGTCGGTCCACTTTGTTCAAGAACCTATTGCAGAAG ATGA
AA sequence Show only first row Show all	>Potri.008G024801.1 pacid=42805978 polypeptide=Potri.008G024801.1.p locus=Potri.008G024801 ID=Potri.008G024801.1.v4.1 annot-version=v4.1 MYVLQCKKNLQTRGCHSLIPTLLLFLVHLIIGKIKKEQYQAHMDATNRSVVRVLMFPWLAYSHIHPFLELAKKLSERNFYIHLCSSPANLGHIKENLLEM NFPSIQLVELHLPSSPDLPPHYHTTKGLPNHLLGNLMQAFDTASSSFSSILTTLRPYFLTCDFFQPWAPALALSLNIPTVQFVVSGNKANSVAAHAFKKS GVVIQDSAKDFLFIKDRILQHLEQSSGIMLVRSLREIEGKYLDDLSAVTMKRVLPVGPLCSRTYCRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024801 [exp]	0	1
					Potri.005G221050 [exp]	4.47	0.7960
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.014G154400 [exp]	5.29	0.8212
AT3G23940			dehydratase family (.1.2)		Potri.001G051700 [exp]	5.38	0.7341
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.002G153200 [exp]	6.48	0.7570
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G239650 [exp]	10.67	0.7503
					Potri.005G038200 [exp]	10.95	0.7586
					Potri.019G024466 [exp]	10.95	0.7779
AT5G05330			HMG-box (high mobility group) ...		Potri.019G049100 [exp]	17.74	0.7562
AT1G52530			unknown protein		Potri.001G201700 [exp]	18.33	0.7540
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.014G135510 [exp]	18.73	0.7642

Compare expression of checked genes

Potri.008G024801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.