Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 159 / 7e-44 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 159 / 1e-43 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 157 / 3e-43 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 157 / 3e-43 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 155 / 2e-42 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 154 / 5e-42 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 151 / 7e-41 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 150 / 2e-40 UDP-Glycosyltransferase superfamily protein (.1) AT2G15480 149 / 1e-39 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024801 [exp] 229 / 2e-72 AT5G65550 63 / 3e-11 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 182 / 1e-51 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 179 / 3e-51 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 170 / 1e-47 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 159 / 1e-43 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 158 / 3e-43 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 157 / 8e-43 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098400 [exp] 157 / 9e-43 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.003G184400 [exp] 156 / 2e-42 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028865 [exp] 361 / 2e-121 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 359 / 2e-120 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 357 / 1e-119 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10028863 [exp] 350 / 5e-117 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 311 / 2e-101 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 270 / 8e-86 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 262 / 3e-84 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 169 / 2e-47 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 169 / 2e-47 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 159 / 1e-43 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.008G024900.2 pacid=42806322 polypeptide=Potri.008G024900.2.p locus=Potri.008G024900 ID=Potri.008G024900.2.v4.1 annot-version=v4.1 ATGGAGACCTCAAGTAAGAGCAATATTCGAGTTCTAATGTTTCCATGGTTAGCTTATAGTCACATACATGCCTTCTTGGAGCTGGCCAAGAAGCTCTCGA AGAGAAACTTTTACATTTACCTCTGTTCAACCCCTGCTAATCTTGCATATATCAAAGAGAAAGAACCTTCAGTAGAATTTGTAGAACTCCATCTTCCATC ATTGCCCGAGCTTCCTCCTCACTACCACACAACCAAAGGTCTGCCCCGACATCTCTTGAGCAACTTGATGAAAGCCCTTGATATGTCAAGCTGTAGCTTC TCCGGAATCTTGACTGCATTAAAGCCAGACTTGCTCATTTCTGATTTCTTACAGCCATGGGCTCCTGCAAAGGCTTTATCACTTAAAATCCCAACCGTTC TGTTCATGGTTAGTGCTGCTATGCCTTACTGTTTTCTGCTTGATCTCGTGAAGATATCAGGTAGCACTGCTCTCCCCTTGCGGTCTAATTATCCACATGA ATATGATTATGAAAACGATAACCTCACGCTTCAAGATCGTCTTCTTCAATGCTTGGAAGGATCCAGTAATCTCATGCTGATTAGAAGTCTTAGGGAGTTA GAGGGAAAATATGTAGATGAACTCTCAGTGCTAGCCATGAAGAAGATTGTGCTAGTGGGTCCACTTGTTCAGGAACTTAGCGAGGAAGAAAATGAGAAAA CAGAAATCATAGAATGGCTCAACAAGAAAGACCCATGCTCAGTCTTGTTTGTTTCATTTGGCAGTGAGTGTTACTTGTCCAGAGAAGACAGAGAAGAGCT AGCTCATGGATTGCTGCTTAGCAATGTAAGTTTTATATGGGTCCTCAGGTTTCCTCAGGGAGAGAAAATAAGTGCAGAAGAAGCTTTGCCAGAGGGGCTT GTTGAGATGGTTGGAGAAAAGGGATTGTTCATTGAAGACTGGGCTCCCCAGAAGAGAATCTTGGATCATCCTAGCATAGGTGGGTTTTTGAGTCATTGTG GCTGGGGTTCTATAATGGAAAGCATGAAAACCGGTGTTCCAATAATAGCCATGCCTATGCATGTTGATCAACCATGTAATGCCAAGCTCTTACAAGAGGT TGGTGTTGCTTTGGAAATCAAGAGAGAGCAGAACGGCAAACTTGGAAGAGAAGAGGTTGCAAAAGTGGTCAGAGAAGTGGTTGTGGAGGAAACAGGAGAG CAGGTGAGAAGAAAAGTCAGAGAATTGAGAGAGCGTATAAGAGGCAAAGAAGATGAAGATATGGATGAGGTAGTAAATGAGCTTGTCAAACTTTGTGGCC GGGAAGCAAATAAACCTCTTTAG
AA sequence Show only first row Show all	>Potri.008G024900.2 pacid=42806322 polypeptide=Potri.008G024900.2.p locus=Potri.008G024900 ID=Potri.008G024900.2.v4.1 annot-version=v4.1 METSSKSNIRVLMFPWLAYSHIHAFLELAKKLSKRNFYIYLCSTPANLAYIKEKEPSVEFVELHLPSLPELPPHYHTTKGLPRHLLSNLMKALDMSSCSF SGILTALKPDLLISDFLQPWAPAKALSLKIPTVLFMVSAAMPYCFLLDLVKISGSTALPLRSNYPHEYDYENDNLTLQDRLLQCLEGSSNLMLIRSLREL EGKYVDELSVLAMKKIVLVGPLVQELSEEENEKTEIIEWLNKKDPCSVLFVSFGSECYLSREDREELAHGLLLSNVSFIWVLRFPQGEKISAEEALPEGL VEMVGEKGLFIEDWAPQKRILDHPSIGGFLSHCGWGSIMESMKTGVPIIAMPMHVDQPCNAKLLQEVGVALEIKREQNGKLGREEVAKVVREVVVEETGE QVRRKVRELRERIRGKEDEDMDEVVNELVKLCGREANKPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	0	1
AT1G74150			Galactose oxidase/kelch repeat...		Potri.013G008200 [exp]	1.41	0.8321
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	1.41	0.8519
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	2.00	0.8208
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.004G111100 [exp]	3.46	0.8210
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	4.24	0.7861
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.011G044100 [exp]	4.47	0.8197
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.005G207700 [exp]	8.06	0.7773
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.011G022800 [exp]	8.12	0.8073
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.004G143700 [exp]	8.71	0.7549
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G127200 [exp]	9.38	0.7892

Compare expression of checked genes

Potri.008G024900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.