Plant FIBer expression Database

Potri.008G025000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52240 198 / 2e-54 unknown protein
AT2G37300 41 / 0.0008 ABCI16 ATP-binding cassette I16, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G082700
[exp]
47 / 2e-05 AT2G37300 71 / 1e-14 ATP-binding cassette I16, unknown protein
Potri.006G216300
[exp]
43 / 0.0004 AT2G37300 56 / 2e-09 ATP-binding cassette I16, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043425
[exp]
194 / 4e-53 AT3G52240 167 / 9e-44 unknown protein
Lus10034158
[exp]
192 / 1e-52 AT3G52240 148 / 3e-37 unknown protein
Lus10009075
[exp]
41 / 0.0008 AT2G37300 68 / 9e-15 ATP-binding cassette I16, unknown protein
PFAM info
Representative CDS sequence
>Potri.008G025000.1 pacid=42808247 polypeptide=Potri.008G025000.1.p locus=Potri.008G025000 ID=Potri.008G025000.1.v4.1 annot-version=v4.1
ATGAATAATTCTGATCAAGAGAAGCAAGATCAGAGGACCCGTTCTAGCATGGAGGATTCCACGGCTATAACTATTGAATTTCTTCGGGCACGGTTGCTAG
CTGAAAGATCTGTGTCAAGAACTGCAAGACAGAGAGCTGATGAACTAGCAGAAAGAGTAGCAGAACTGGAGGAACAGCTAAGGATCGTGTCTCTTCAAAG
AATGAAGGCTGAGAAAGCAACAGTAGACGTTCTTGCCATCCTGGAAAGCAATGGGATCAGTGACGATTCTGAAATCTTTGGTTCTAGCTCTGATCAGGAT
ACTCCTTGTGAATCCAAAGTGGGCAAGAAGACTAAACAAGAAGAGAGTTCTGTCATTTCAAAAGTGACAAAATATAAGTTGGAAGAACATTCAGGTTCTG
GCCATGATTTTTCCTCATCACAAGGTAGAAACTTGTCTTGGAAAGGTCGCAAGCATAGTCCACGTTCTCTTGAAAAGTGCAAGGATCCATCTCTGAGGAG
ACGGAGCAGTTTTGCATCTACCAGTTCTTCCCCTAAACATCACCAAGGCAAGTCATGCCGCCAAGTAAGAAACAAAGAATCAAGATTGACAATTGGAGCA
TTTAGGACCAATCCAGACAAGGTTGATTCTCCAGAAAATGGAGTTGCTACCACATCAGAAGTTTTTCCAAATTGCTCAGAACCTGAGGTGGGAAGAATTG
AAAATGGAGAAGAGAAAACTTTACCCCCAATATCAGTTGGCTTAGAAAATGGACAGCGTGCAGATAGTAATGAGCTGGAAGACAATGTATATGGCAGTGA
TAGAGACATGGAAAAAGCACTTGAACATCAAGCACAACTCATTGACCGATACAAAGCAATGGAAAAGGTTCAAAGAGAATGGGAAGAGAAATTCAGAGAA
AACAATGGCAGTACACCAGATTCATATGATGCTGGAAACCGCTCAGATGTCACTGAGGAAGGCTATGAGATCAAGGCACAAGTTCAACAACACACTGGGA
CCGTAGCTGCCCAATCCAACCGGGCAAAGTCAGAAGTTGAAAAGGCATCTAACATTCAACCTAATGGCATTCTACGACCTTCACATGTTAATATTGGGCA
GTTACAGGAATGGAAGAGCAGTAGTGCACCTACTTCTGAATCCCCAGCTCAAGATTTTGCATTCCGTGCTGAAAAGCAAAAGCAAAATGAAAATGAAGAG
AGTCTTGGGAACAATTACCATCCATCTCCACACAGCTCCCACGACCATCCGCAGTCACACAGTTCACATGATTCCCCTGGGAGCCAATCTGCAACCAGCT
TTCCATCTAATACAGACAGTGGTTTCAGCAAAGGGCAATTTTCTGGGAGGCAAAATGAACTCTATGCATTGGTGCCACATAGAGCATCCAATGAATTGGG
TGGTGTGCTGGATGCCCTTAAACTAGCAAGGCAATCGTTGCAACAGAAAATCAGCACATTACCATTAATAGAAGGTGGATCTATTAGAAACTCTGTTGAT
CCTTCTCTTCCCCCTCCAATACCAGGCGATAAAGTAGATATTCCCCTTGGAAATGCTGGACTTTTCAGACTTCCATTTGATTTTTTGGCTGAAGGCAGCA
CTCGAAAAAACCTCGATAGTACTAATGCTGGATTAAGTTTGAGAAACTATTATCCTGATACAGGAGTTCCAGCAGCTGCCATCAATCGATTTGTCAGCAG
ATTTCCGACAGCAACTGGATCGAGATTTCCTACAGCGGATCAATTTCTGGCCAGTCAATCTTACTCAGCAACTGGATCGAGATTTCCTACAGAGGATCAA
TTTCTGGCCAGTCAAGATGTCGAGGCTGGATCAAGAATCTCTAGTCAGAGGCCTTTTTTTTATCCTTATTTGGATACAGTTTCACCTCCCTCAGCCAGAT
ATAGTTATCCCACAAATCCCTCTTATCCCGGCCCGATGCCACAACTGCCCTCAAGGGAACCCCCTTCCTTCCTTCCCAGTACGACTGCTGGTGTCCCTCC
TGCAGATCATTTCTCATTCCCTGATTATCATATTAGACCAAACATGTATAGATAA
AA sequence
>Potri.008G025000.1 pacid=42808247 polypeptide=Potri.008G025000.1.p locus=Potri.008G025000 ID=Potri.008G025000.1.v4.1 annot-version=v4.1
MNNSDQEKQDQRTRSSMEDSTAITIEFLRARLLAERSVSRTARQRADELAERVAELEEQLRIVSLQRMKAEKATVDVLAILESNGISDDSEIFGSSSDQD
TPCESKVGKKTKQEESSVISKVTKYKLEEHSGSGHDFSSSQGRNLSWKGRKHSPRSLEKCKDPSLRRRSSFASTSSSPKHHQGKSCRQVRNKESRLTIGA
FRTNPDKVDSPENGVATTSEVFPNCSEPEVGRIENGEEKTLPPISVGLENGQRADSNELEDNVYGSDRDMEKALEHQAQLIDRYKAMEKVQREWEEKFRE
NNGSTPDSYDAGNRSDVTEEGYEIKAQVQQHTGTVAAQSNRAKSEVEKASNIQPNGILRPSHVNIGQLQEWKSSSAPTSESPAQDFAFRAEKQKQNENEE
SLGNNYHPSPHSSHDHPQSHSSHDSPGSQSATSFPSNTDSGFSKGQFSGRQNELYALVPHRASNELGGVLDALKLARQSLQQKISTLPLIEGGSIRNSVD
PSLPPPIPGDKVDIPLGNAGLFRLPFDFLAEGSTRKNLDSTNAGLSLRNYYPDTGVPAAAINRFVSRFPTATGSRFPTADQFLASQSYSATGSRFPTEDQ
FLASQDVEAGSRISSQRPFFYPYLDTVSPPSARYSYPTNPSYPGPMPQLPSREPPSFLPSTTAGVPPADHFSFPDYHIRPNMYR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52240 unknown protein Potri.008G025000
[exp]
0 1
AT5G13590 unknown protein Potri.010G213800
[exp]
7.07 0.7478
AT1G20670 DNA-binding bromodomain-contai... Potri.004G206200
[exp]
41.85 0.7115
AT2G33490 hydroxyproline-rich glycoprote... Potri.003G166300
[exp]
50.10 0.7080
AT3G17205 UPL6 ubiquitin protein ligase 6 (.1... Potri.008G101300
[exp]
53.38 0.7020
AT1G76510 ARID ARID/BRIGHT DNA-binding domain... Potri.002G003700
[exp]
57.60 0.6723
AT5G45030 Trypsin family protein (.1.2) Potri.015G121400
[exp]
58.66 0.6818
AT1G64050 unknown protein Potri.003G133100
[exp]
59.19 0.7008
AT2G01060 GARP myb-like HTH transcriptional r... Potri.006G000800
[exp]
61.13 0.6775
AT5G16120 alpha/beta-Hydrolases superfam... Potri.017G114800
[exp]
61.50 0.7044
AT3G13225 WW domain-containing protein (... Potri.001G371600
[exp]
94.23 0.6826

Potri.008G025000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.