Plant FIBer expression Database

Potri.008G025100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38790 54 / 6e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G025200
[exp]
264 / 3e-91 AT2G38790 50 / 1e-07 unknown protein
Potri.010G235400
[exp]
199 / 2e-65 AT2G38790 63 / 4e-12 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G025100.2 pacid=42808275 polypeptide=Potri.008G025100.2.p locus=Potri.008G025100 ID=Potri.008G025100.2.v4.1 annot-version=v4.1
ATGTCTGAGGGCAATCATCGCGACGCTCCCTTGGTGTGTCCTGAACTGGATATTTATCAGTTTGGTTACCCAAGGTGTGATACAGCAGATTCCATGGCAT
CAAGCTCCAGTGATTCTCCTTTTTTATGCACAAATGACGATTTGTCAATGTTGGAAAGTGGTCTGTACCAGCAAAAGTATGGTGATATGAGTGATAAATG
CTATAGAAATCAGGACAAGGCATGGGAATCCATTGATTCCAGGTTCCTCATGTTGCTAGGATTCTTTAGAGAATTGTTTTTTCGAAGAAGGGAAGTTTTC
AAGAAATTATTTCCAGAGTTACATGATGAATTTCTGGGGATGTTCAAGAAAATTGGTAACATCAATTTATACGTAGAAAAACCTTGTGAATTCAAGACTA
GGGCATTATGCTTGCAAAGGAGCTTGAGTGTTGGCTCACCAAGAACACCTTCGAGAAATGGAGGTGAATCGCCATTAAGGCTCGAGAGGTTCAAGGTTCG
CACGGTGGTTCCTGGCGGCGGTGGCCAAGGTGACAGAGGTGCTTCTAATTAA
AA sequence
>Potri.008G025100.2 pacid=42808275 polypeptide=Potri.008G025100.2.p locus=Potri.008G025100 ID=Potri.008G025100.2.v4.1 annot-version=v4.1
MSEGNHRDAPLVCPELDIYQFGYPRCDTADSMASSSSDSPFLCTNDDLSMLESGLYQQKYGDMSDKCYRNQDKAWESIDSRFLMLLGFFRELFFRRREVF
KKLFPELHDEFLGMFKKIGNINLYVEKPCEFKTRALCLQRSLSVGSPRTPSRNGGESPLRLERFKVRTVVPGGGGQGDRGASN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38790 unknown protein Potri.008G025100
[exp]
0 1
AT2G38790 unknown protein Potri.008G025200
[exp]
1.41 0.9542
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.005G143900
[exp]
2.44 0.9386 IFS1.45,CYP81S8
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.010G220500
[exp]
2.82 0.9462
AT2G26830 EMB1187 embryo defective 1187, Protein... Potri.006G120700
[exp]
3.31 0.8856
AT3G59880 unknown protein Potri.007G145500
[exp]
4.89 0.9196
Potri.009G085900
[exp]
5.47 0.8740
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134601
[exp]
9.16 0.9029
AT1G68450 PDE337 PIGMENT DEFECTIVE 337, VQ moti... Potri.010G123700
[exp]
9.16 0.9073
AT5G44440 FAD-binding Berberine family p... Potri.011G162828
[exp]
9.53 0.8827
AT2G36690 2-oxoglutarate (2OG) and Fe(II... Potri.010G231500
[exp]
16.00 0.8720

Potri.008G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.