Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03680 353 / 7e-115 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 268 / 3e-83 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G76890 224 / 1e-65 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 140 / 3e-35 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 124 / 8e-30 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 100 / 6e-22 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 91 / 2e-19 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 49 / 3e-06 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT3G25990 49 / 5e-06 Trihelix Homeodomain-like superfamily protein (.1) AT2G33550 47 / 2e-05 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235000 [exp] 975 / 0 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 234 / 4e-69 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 204 / 5e-59 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 140 / 7e-35 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.005G191900 [exp] 134 / 4e-34 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 136 / 1e-33 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.019G010200 [exp] 129 / 6e-32 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 129 / 1e-31 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 129 / 1e-31 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014375 [exp] 248 / 1e-75 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10023872 [exp] 236 / 5e-72 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 224 / 2e-66 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10027718 [exp] 194 / 6e-56 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10035570 [exp] 192 / 1e-54 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 133 / 8e-33 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 132 / 3e-32 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 129 / 2e-31 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 123 / 8e-30 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10028584 [exp] 118 / 3e-28 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G025600.1 pacid=42806132 polypeptide=Potri.008G025600.1.p locus=Potri.008G025600 ID=Potri.008G025600.1.v4.1 annot-version=v4.1 ATGAGTGAACACCACCACCAGTACGGAATGCCAGATCTCCGGCAACTGGTGGCCGGAAGAAGTCATTTTCAAGGAACCCAGCAAGGGGGTGAGCCATTCT TTGTTCAAAGTAGGAATCTCGCCGCACCACAAACACATCACTTTGAGTCCATTATGGTTGGCCATGAAGCAATGTTGTCAAGTGGTTTAGTCAAGCTTGG TGGGCATCATGATCGTTACTGCACCAATGCCACTAATATTAATACTACAAATAGTGCTACAATTGGCACTAGTAGTTCAGCTGGTGTTGGTACCCTATAT GGAGTAGAAATGGAAAGTGCTACTACTGCTGGGTGGATTGGAAATGATGGAGGAAATAATAGTAGATGGCCAAGACAAGAGACTCTTACTCTTCTTGAGA TCAGATCTAGGCTTGATTCCCGGTTCAAGGAGGCTAATCAAAAGGGTCCATTATGGGATGAGGTTTCAAGGATCATGGCTGAGGAGCACGGGTACCATAG AAGTGGCAAGAAATGTAGAGAGAAGTTTGAGAACTTGTACAAGTACTACAAGAAAACCAAGGAAGGGAAAGCTGGGAGACAAGATGGCAAGCATTATAGG TTCTTTAGGCAGCTTGAAGCCCTTTATGGAGAGCCAAGCAATCAAGCTTCAGCCTCGGAAACCCATTTTGTTAACAACACACTTCTTTACCAAGCTCCAA TGAGCAACACAATCAACCAAGAAAGTCAAGAAACATTTCAAGAAAACAAGCACAGTGAGAGTCTGAGTTTCTCCAACACATCCGAGTTTGAGACTTCTTC ATCAGAAAACAATGATGATGACCTTTCAGCTATTGCTTACAACATGATGAACCGATCAACGGAAAAACAGAAAGGGATAAATGAGAGCCAAAGTCTTGCA AGGCCTAAAAAGAGTTGGAAACTAAAGGTTAAGGACTTTGTGGACTCACAAATGAGGAAGTTGATGGAGAAACAAGATGCCTGGATGGAGAAAATGTTGA AGACCATTGAAGATAGAGAGCATGAAAGAATGTGTAGAGAGGAAGAGTGGACAAAACAAGAGTTGGCTCGGTTCGATCAGGAACATGAGTTTTGGGCTAA AGAGAGAGCATGGATTGAAGCTAGAGATGCTGCATTAATGGAAGCCTTGAAGAAACATACGGAGAAAGGACTAGAACTGTCATCATCAGTTGAGCAAATC GCAGTAGCCACTCAAAGGCACAACAAAAACCCGGACAGCGCTGTTGCTAAGAAGATTCAGAAAGACAAGTTCAATAACATTACATGGACTGAGCCCGAGA TCCTGAGCTTCATACAGCTCAGAACCTCCATGGACTCAAGATTCCAAGAGAATGGGTATTCGAATGAAGGCCTTTGGGAGGAGATAGCAGCAGAGATGGC TAGTTTAGGCTATGATAGGAGTGTGGATGAGTGCAAGGAGAAATGGGAGAGCATGAATATCTACTTTAACATGACAACAGAGTCTAACAAGAAGCGTAAA GAGGATTTAAGGACCAGCAATTATTTTCAGCAACTTGAATCCTATAATGGCATGAATTCATCACCTTCTAACTCTTATGTGGGTAGTCAAGTGAATGATA ACAGCTGCTTTCAGGTTCAAATAAATGAAGGAGATCAGCATTTGTGGAATACTAATAAGTTTGACTTGAAGCTCAACAAGGAGAAGAACCAGCAGCAACT TTGGCACAACAAGTAA
AA sequence Show only first row Show all	>Potri.008G025600.1 pacid=42806132 polypeptide=Potri.008G025600.1.p locus=Potri.008G025600 ID=Potri.008G025600.1.v4.1 annot-version=v4.1 MSEHHHQYGMPDLRQLVAGRSHFQGTQQGGEPFFVQSRNLAAPQTHHFESIMVGHEAMLSSGLVKLGGHHDRYCTNATNINTTNSATIGTSSSAGVGTLY GVEMESATTAGWIGNDGGNNSRWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMAEEHGYHRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYR FFRQLEALYGEPSNQASASETHFVNNTLLYQAPMSNTINQESQETFQENKHSESLSFSNTSEFETSSSENNDDDLSAIAYNMMNRSTEKQKGINESQSLA RPKKSWKLKVKDFVDSQMRKLMEKQDAWMEKMLKTIEDREHERMCREEEWTKQELARFDQEHEFWAKERAWIEARDAALMEALKKHTEKGLELSSSVEQI AVATQRHNKNPDSAVAKKIQKDKFNNITWTEPEILSFIQLRTSMDSRFQENGYSNEGLWEEIAAEMASLGYDRSVDECKEKWESMNIYFNMTTESNKKRK EDLRTSNYFQQLESYNGMNSSPSNSYVGSQVNDNSCFQVQINEGDQHLWNTNKFDLKLNKEKNQQQLWHNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.008G025600 [exp]	0	1
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.014G025300 [exp]	2.00	0.9341
AT4G11950			Protein of unknown function (D...		Potri.003G119400 [exp]	2.44	0.9385
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	5.19	0.9422
AT3G25130			unknown protein		Potri.002G246400 [exp]	7.34	0.9269
AT5G43420			RING/U-box superfamily protein...		Potri.010G072700 [exp]	9.38	0.9225
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	11.18	0.9291
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	11.22	0.9264
AT2G22560			Kinase interacting (KIP1-like)...		Potri.007G011300 [exp]	12.04	0.8753
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	12.24	0.9089
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	12.60	0.9344	Pt-FLA11.2

Compare expression of checked genes

Potri.008G025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.