Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03730 671 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 330 / 7e-101 Protein kinase superfamily protein (.1) AT5G49470 313 / 2e-99 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 308 / 2e-94 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT1G08720 309 / 3e-93 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 308 / 3e-93 Protein kinase superfamily protein (.1) AT1G73660 310 / 6e-93 protein tyrosine kinase family protein (.1) AT3G06640 303 / 9e-93 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G18160 308 / 2e-92 Protein kinase superfamily protein (.1) AT3G06620 298 / 1e-90 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234700 [exp] 1017 / 0 AT5G03730 655 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 723 / 0 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.016G095750 [exp] 709 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 476 / 4e-156 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 339 / 4e-104 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.008G105100 [exp] 308 / 4e-94 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 308 / 5e-94 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.015G040100 [exp] 311 / 4e-93 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 307 / 1e-91 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023865 [exp] 689 / 0 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 681 / 0 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10043428 [exp] 677 / 0 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10034154 [exp] 606 / 0 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10028169 [exp] 308 / 5e-96 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10016912 [exp] 311 / 1e-95 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10031341 [exp] 312 / 6e-95 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10037772 [exp] 310 / 1e-94 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10040540 [exp] 308 / 3e-94 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10027247 [exp] 312 / 4e-94 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.008G025800.21 pacid=42807447 polypeptide=Potri.008G025800.21.p locus=Potri.008G025800 ID=Potri.008G025800.21.v4.1 annot-version=v4.1 ATGGATAGTTGGTGTGGAGGAGAGGCAACAATTAAGAGCCGGGCTAAACAAACTGAAGAGAGTTATCAGTTACAGCTTGCTCTTGCTTTGAGGTTATCTT CACAGGCTGCTTCAGCTAATGATCCCTATTTCTTGGATTTCAGTTCTAGTGACAATACTAAAAGAGGACTTCCTCCTTATTCTCCCGAGTCTCTTTCTCA TCGATTCTGGGTGAGTGGAAGTTTGTCATACTTCGATAGAATTCCAGATGGGTTTTATGTGATACATGGATTGGATCCTTATACATGGAGCATAAGTGCT GATAGTCGTGTCCCATCTTTTGAATCATTAAAGGCTGTTAATGATTTGTCAATAGGAGTGGTTTTGATTGATAGATTCAGGGATCCTGGTTTGAAGGAGG TACATAATAGAGTTACTGGTCTTTCGAGCAGCTTGAGTACAACCGAAGATGTGGTTAAACACCTTGCGATTGTTGTTTGTAATCTTATGGGGGGTGTAGT CCTCAATGAAGATGATAATGCCTTTGCCGAATGCTGGAAGGAATGTACTGAAGTGATGAAAAGGCGCTTCCGTTCTGTTGTGCTTCCAATTGGAAGCTTA TCCATTGGCCTTTGTGTTCATCGTGCATTGCTGTTTAAAGTATTAGCAGACTCGATTAACTTGCCTTGCAGAATTGTTAAAGGATGTAAATACTGCAGAA GAGATGTCGTTTCATCCTGTCTGGTACAAGTTGGTAATGACAGGGAATACTTTGTTGATTTGCTTAGAAATCCAGGAGCCCTAAGCCAGCCTGATTCCTC GCTCAATTGTTCATCTTCAATCTTAGTTTCTTCTCCATTGTCTCATCCAAGGTTTAAATCTAATCAAACAACCGAGGACTTCAGGACATTGGCCAAACTC TACTTCCTTGACAGCCAGCCACTTAATCTTGTATTTGATAATTCTTCTTCAGGCCCTACTATTGATGAAGATGACAAATTTATTTCAAGGCTCGGTAAAG ACAAGAAGAACCTTCTGCCCACTTCAAGCAACAACCGTGACACTTCTCTGTCAAGTTCTGTCCTACCAGTTAGGCAAAAATATACAGATCCTGTCGTCTC TAATCCCAAGCGTGTTGCTACAAATAATTTGTTGTTCATGGAATTAAACCAGTCAATACCAAGTAAATCAAACAATCAACTTCATCTTGAAGAGGAAGAT TTGGATGTACCCTGGAGTGAACTTCTTTTGAAGAATAAAATTGGATCAGGCTCTTTTGGAACTGTCTATCATGCTGACTGGCGTGGTTCGGATGTTGCTG TCAAAATTCTTGAGGAGCAAGAATTTCATGCAGAGCGCTTTGAGGAATTTTTGAGTGAGGTTGCTATCATGAAACGTTTGCGACATCCAAATATCGTTCT TTTTATGGGTGCTGTTACCCAGCCCCCAAACTTGTCCATAGTTATGGAGTATTTATCAAGAGGCAGCTTGCACAAACTTTTACATATGAATGATGCTGCA TCGATACTGGATGAGAGGCGCCGCTTAAATATGGCATATGATGTGGCTAAGGGAATGAACTATCTTCATCAGTTTAGACCTCCCATTGTTCATCGAGATT TGAAATCTCTAAATCTCTTGGTGGACAGTACATATACGGTAAAGATTTGTGATTTTGGTCTGTCACGATCAAAAGCAAAGACATATATTTCATCAACAAA TGCTGCAGGGAGACCCGAGTGGATGGCCCCAGAAGTACTCCGTAATGAGCGATCAAATGAGAAATCAGATGTTTACAGCTTTGGTGTAATCTTGTGGGAA CTTATGACCCTGCAACAGCCCTGGAGAAACTTAAAACAAGCACAGATCATTGAAGCTGTTGGTTTTATGGGCCAAAGGCTTGAGATTCCAAGCAGTGTAA ATCCTTCAGTGGCTGCCTTGATTGATGTCTGCTTGGATAATGAGCCCTCTAAACGTCCCCCATTCTCCTATATCATGGAAACTTTACAGGAACTGATAAA TAACTCTATCTCCCATCCAGTTGCCGCTCAAGTTCGATGA
AA sequence Show only first row Show all	>Potri.008G025800.21 pacid=42807447 polypeptide=Potri.008G025800.21.p locus=Potri.008G025800 ID=Potri.008G025800.21.v4.1 annot-version=v4.1 MDSWCGGEATIKSRAKQTEESYQLQLALALRLSSQAASANDPYFLDFSSSDNTKRGLPPYSPESLSHRFWVSGSLSYFDRIPDGFYVIHGLDPYTWSISA DSRVPSFESLKAVNDLSIGVVLIDRFRDPGLKEVHNRVTGLSSSLSTTEDVVKHLAIVVCNLMGGVVLNEDDNAFAECWKECTEVMKRRFRSVVLPIGSL SIGLCVHRALLFKVLADSINLPCRIVKGCKYCRRDVVSSCLVQVGNDREYFVDLLRNPGALSQPDSSLNCSSSILVSSPLSHPRFKSNQTTEDFRTLAKL YFLDSQPLNLVFDNSSSGPTIDEDDKFISRLGKDKKNLLPTSSNNRDTSLSSSVLPVRQKYTDPVVSNPKRVATNNLLFMELNQSIPSKSNNQLHLEEED LDVPWSELLLKNKIGSGSFGTVYHADWRGSDVAVKILEEQEFHAERFEEFLSEVAIMKRLRHPNIVLFMGAVTQPPNLSIVMEYLSRGSLHKLLHMNDAA SILDERRRLNMAYDVAKGMNYLHQFRPPIVHRDLKSLNLLVDSTYTVKICDFGLSRSKAKTYISSTNAAGRPEWMAPEVLRNERSNEKSDVYSFGVILWE LMTLQQPWRNLKQAQIIEAVGFMGQRLEIPSSVNPSVAALIDVCLDNEPSKRPPFSYIMETLQELINNSISHPVAAQVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.008G025800 [exp]	0	1
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	2.82	0.8077
AT3G15280			unknown protein		Potri.001G398300 [exp]	4.24	0.7990
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	7.14	0.7798
AT3G28430			unknown protein		Potri.006G073600 [exp]	10.24	0.7402
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036500 [exp]	10.48	0.7024
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	13.85	0.7274	Pt-UBP27.1
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Potri.003G031100 [exp]	16.00	0.7109
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	16.61	0.7481
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	17.23	0.7185
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.010G210100 [exp]	18.00	0.7086

Compare expression of checked genes

Potri.008G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.