Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04560 1031 / 0 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT2G36490 743 / 0 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 624 / 0 DML2 demeter-like 2 (.1) AT4G34060 497 / 8e-152 DML3 demeter-like protein 3 (.1.2) AT4G04957 79 / 2e-17 Domain of unknown function (DUF1985) (.1) AT3G47830 68 / 9e-12 DNA glycosylase superfamily protein (.1) AT1G05900 47 / 8e-05 ATNTH2 endonuclease III 2 (.1.2) AT2G31450 47 / 0.0001 ATNTH1 DNA glycosylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234400 [exp] 2775 / 0 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.006G116000 [exp] 1047 / 0 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.001G150001 [exp] 560 / 4e-170 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.015G071300 [exp] 69 / 5e-12 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027713 [exp] 715 / 0 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 711 / 0 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10023864 [exp] 351 / 9e-98 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10014367 [exp] 338 / 1e-93 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10034120 [exp] 66 / 1e-10 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 52 / 7e-06 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15628 [poplar] [flax] RRM_DME RRM in Demeter PF15629 [poplar] [flax] Perm-CXXC Permuted single zf-CXXC unit
Representative CDS sequence Show only first row Show all	>Potri.008G025900.2 pacid=42805843 polypeptide=Potri.008G025900.2.p locus=Potri.008G025900 ID=Potri.008G025900.2.v4.1 annot-version=v4.1 ATGGAGAGATTTCCAATCCCGCAGGATATTGATTTCTTACCAACAATGACAGGGAAGCCCATTCCAAGATCTAATGTGATGCTGACTGATGGGCAAGGGA ACCAATTGGGCAGAACGAATTGGCAACTGGGCGGATTTTCCAGTGGATGTGAACAGGATGTGTCAAGTTACAGCAGAGTGACTCAACATGCTGACCAGAT TGATCAACTGGTTAGAAATGGTGGGGATAATATTAGGAATGCAGGCATAGGTCATGAGGTGACAAGAATGGGTAATAATACGGGCAATCATATAGAGAGT CAGACCGCAGGTTTGAATAGCAGTTTATTAGCAAGTATCTTAGCATATCCAAATATAGCTACATTTACCTCTCCAGTCGCACCTCCTAGTGCAAGCACAT GCATGGTTTGGAGGCCTTCATTTCCCAACCTGCATGCTCAAGTCAACAATTGCAGTGAACCCAATTTGCTGCTCGGAAACCAAGCTCGCTGCTGGAATCT TTTGAGCAGCAGCTATATCTCACCCCAGACACACTATGAACCTCCATCGCCTTGGCTTCCTCACCATGATCTAAACTCATCACCAAGAATAGAAGCTGAT GCAGCCTCAAGTGTTACCACCTCTTTTAAATTTGCCACAGTAGTGCCAGATCAGGCCAAGAGATTGGAGAGTAAGCTTCCTACAACAATGAGTCCCTCGC GAGAAAAAAACTCAAGTGGAGAAAATGAGAAAAATGATTTAGTTGTATTCAATGAACTCAAAGCCAATCAACAAAATTCAGAAGAGCTCTCGTGTAACAT TGCAGACTCATCTTCTGCTGTCATTTCTACACCATTTGAGGGAGAAAAAGATCTAGCAAGGCCAGATGAACAAGGCATCGACCTTAATAAAACACCACTG CAGAAACCTCCAAAGAGAAGAAAGCATAGGCCAAAGGTGATTGTGGAAGGCAAACCAAAAAGGACTCCCAAGGCTGCAACCACAAAAAACACCGACCCCA AGGAGAAGTCAACTGAAAAGCGGAAGTATGTTCGCAAGGCTTTGAAAGAGCCAGCAATTCAACAAACAGATTCTGCTATAGAGACTACACCTCCCAGCTC TGCAAAGAGGAAGTATGTGCGCAAGAAGGGCCTGAATGAATCAGCAGTTCAACATACAGATTCTATTGGAGAAACCATAAATACCCGTCCTGTGAAGAGA AAGTATGTGCGCAAGAAGGGCCTGAATGAATCAGCAGTTCAACATACAGATTCTATTGGAGAAACCATAAATACCTGTCCTGTGAAGAGAAAGTATGTAC GCAAGAAGGGCATAAATGAATCAGCAAATCAGCATGCAGACTCTACAGTAGGGATTGCACATTCCAGTGCTGAAGTTGGTGCAAAATCATGTAGAAGAGA ATTGAGGTTTGATTTGGAAACTACCACAGATGAAAGATACAGTAATGCAGCTGCTCAGGAGGACATGCTGAATAAAAAAAGAGGGACTTTTGATCTGAAC ACAAGTCTTCAAGTGGCAGATTCAAGCACTACAACTTCACAGATGAACCAGCATAATAGTTTACAGGTTGAAAACAAGCAATCAGGTGCTACAAGTAACC AGACACCTCTCATGAACCAGATGGGAAGAAGTTATACATCAATTTCAGAAAGACATGCAGTAGCTGCTGAACTAACTCCAAGAAAAATCATGCACATGGA GAATTTAAACGTCAATGCAAGAGATGCACGAGGAATTGGTCAAGTTGTCTTTCTAGAAAAAAGACCAGAGCGGACTAGACAGATAACATATCAGAATACC CCTCAATCAGTACAAATGATACCATTATATTTAATTGAGGGTAGAGGATCCAAGAGAGAACACCTTCATATTGAGAAAACAAACACTTGTACTTTTCAAC CAGTGGGCTCATTGTTTGATGAATATTATCAAAGCATTCCAGGCGTGGGATGTTTGGAGGCCCAGAAAAGAAACAAAACAGAGAATGGGACTCAAACAAA CACACTGAGTATGTCTTCTTGTGTTGCAACAACTAAATATCCTGGTGAGTGGTATGTTCACCCGACAGCTTCACAGAACCTTCCAAAGCAATGTATTTCA TTTAACCCGATTTTACACCTAGAAAGGACAGGAGAGTCTAATGGATTGGCTCAAGTCCATAACTCCCTCTCCCCCACCACAATAGCAGTTTGTCACAACC TTTCACAAACCCCTCTCAAAACAAACCATGCATCTGATAGCCAACTGCAACCTGAAACTTGCAACACTGAAATGTCAAGAATACAGCAGATGTCTGGAGC TACTGTGTCAATAACAATTCCATCTGGAAAGGGTAGGATGCCGCAACAACCAAAGGATATCTTGAAAGAACATCAGCAGCCATCTGCAAAGAGAAGAGGG CGACCAGCAAAGCAGAAATTCTCCTCTACAATTGAAGAAATCATACACCACATGGAGTGCCTCAGTCTCAATGCAAGGAGCAAAAAAATAAAAAACAAAG AGCAAAATGCACTTGTGCCTTATAAAGGAGGTGGCACACTTGTTCCCTATGACGGGTTTGAATTTGTCAAAAAACACAAGCCAAGGCCTAAAGTAGACCT TGACCCAGAGTCAGACAGAGTATGGAAACTGCTGATGGGAAAAGAAGGAAGTGAAGGCCTTGAAAGAACAGATAAAGGGAAGGAGCAATGGTGGGAGGAA GAGAGAAAAGTTTTTCATGGGCGAGTTGATTCATTCATTGCAAGAATGCATCTCGTTCAAGGAGATAGGCGTTTTTCAAAATGGAAGGGATCGGTTGTTG ATTCGGTAATAGGAGTTTTCCTTACCCAAAATGTTTCAGATCATCTGTCAAGCTCTGCCTTCATGTCTCTAGCTTCATTATTTCCTCTGAAGTCTAGGAG CAATGCAGCTCATGACAGCCATAGGAAAGGCATCATGGTTGAAGAACCAGATGTCTGCATGCAAAACCCAAATGACATCATCAAATGGAACAGCAAGTTT AGGTATCCACTCTACAACCAAAGCCCCATTACACACCATGGATCAGCAGAACCACAGGGAGAATCTGAAACTTGGTGTATAGAAAGAGCAAGCATGGTAG GGGCACAAAGTCACAGCCTGGAGGAAGAATTTGTATCATCACAAGATTCTTTTGATTCCTCAACTGTCCAAGCAAATGGCGGAGTCAGATCCTACTCAGG CTCCAACTCCGAAACAGAAGACCCTCCTACTGGTTGCAAACCTAGCACAAGTCATGGTTTATCTTTTGTGGATCGTTTAGAGATGGAGAGTCCCACCTTG CTAGAAGAATTTGATGGTTGTGAGAGTGGGAGTTCATTGTTTCATAGGGGATCCGGGCATGAAAATGAGCAAGCAGAAGGTATACAGAACATGCAGCAAG GAGCTGGATTGGAAAGATTAGGTAATCTGAACTGCTTTTCTCCATATAATAAGCAATTCGATTACTGCAATCCACAGATGCAAGGGAAAGTGGTTTCGTG CAGTAACTATGGGTTGCTACACATGACTTCACAGTCCAATGCACAGCAAGCAGAAGGCTTCAAATTGCAGAGTGAAGATTCCATATCTTCTTGGACATCA AATTCTTCCAGATTCAACAAAGAAAAGGCTGCAAGCTGCTCAAGCAAAACTGTTGGACAAAAGGCTGCGAGTGTGGGTAAAAAAGCTGCCAGGGAATACG AGTTGCCAAGGTATCAAGAAGCTCCACTAGCAGTCCAACATTCTCTCTACAGAAAGCAATCAATGTATGAACAAAGCAGTTTTCAGCCTTACCATGAAAA TCAAGTTAATGAGAGGAACGAGACCTTGCAATGGCAAAGCATGTCAGCTGGTGGACCTGTAAATCTTGCCGAAACATTGCCTGAGAAGCAAAACAGTTAC ACACAGCACATCTCGAATGTCCCCAGACTCACAGAAAACATTCTTGATTTTCAGAGGATCACTTCCGTGAATAAGCAAACACCCCAAGAAAACATAGTGG TTGACCCAAATACAAAGAAGAAAGTACATCCTGATAACAGGGAAAACCTCAAGTCAAATGCAAATGCCTCAAAAGCTAGAAAAGGAAAAGTTGAGAGTGA GAAAGCAGATGTATTTGACTGGGATAGTTTAAGGAAGCAAGTGCAGACAAATGGAAGAAAAGAGAGAACCGAAGACACGATGGATTCCTTGGACTATGAA GCAGTGCGATGTGCTGGAGTCAACGAGATTTCTGAAGCCATCAAAGAAAGAGGGATGAATAAAATTCTAGCAGAACGAATCCAGGAATTCCTAAACCGAC TGGTAAGGGAACATGGAAGCATTGATTTGGAATGGTTAAGAGATGTGCCCCCTGGCAAAGCAAAGGATTATCTGCTAAGTATACGGGGGTTGGGGTTGAA AAGCGTGGAGTGTGTGCGGCTCCTAACACTTCATCATCTTGCGTTCCCAGTTGACACAAATGTTGGGAGAATAGCAGTTCGACTAGGATGGGTCCCTCTC CAGCCACTGCCAGAGTCACTGCAGTTGCACCTGCTAGAACTGTACCCAATACTCGAGTCAATTCAAAAATATCTCTGGCCAAGATTGTGCAAACTCGATC AAAGAACACTGTATGAATTACATTACCAGATGATCACATTTGGAAAGGTCTTTTGCACAAAGAGTAGACCCAACTGTAATGCATGTCCCATGAGAGCAGA ATGTAGACATTTTGCAAGTGCCTTCACAAGTGCAAGGCTTGCACTACCTGGACCAGAAACAAAGGATATAACAACTTCAACCGTTCCCTTTATGCCTGAA AAAAGCCCAAGCATAGTCATCAATCCCATGCCATTACTTCCACCTGAGGACAACCAACATAAAAGTGTGGGGTTTGATATTGGCAGTTGTGAGCCCATAA TTGAAGAGCCAGTAACACCGGATCAAGAGCAGACTGAATTAGCAGAGACTGATATTGAGGACTTCGGAGAAGATCCTGATGAAATACCCACAATAAAACT CAACATGGAAGAGTTTACTGAGAATTTACAGAATTATATACATTCAAACATGGAGCTCCAAGAATACGACATGTCCAAAGCATTAGTTGCTTTGGATCCA AATGCTTCTATCCCCACACCCAAATTGAAGAATGTTAGTCGCCTACGGACAGAACACCAAGTGTATGAACTTCCAGATTCACATCCTCTCCTTCAGGGGA ACTTGCAGATGGATAAAAGAGAACCTGATGATCCTAGTCCATACCTTCTAGCAATATGGACACCAGGTGAAACTGCAAATTCAATTGAGCCACCTGAACA ACAATGTCAGTCCCGGGAACCAAACAAATTGTGCAATGAAAAGATATGTTTTTCATGCAACAGTATCAGAGAAGCTAATTCACAAACAGTAAGAGGAACA CTTCTGATACCTTGTAGAACAGCAATGAGAGGAAGCTTCCCGCTGAATGGAACGTACTTTCAAGTGAACGAGATGTTTGCAGATCATGAATCTAGCCTAA ACCCAATTGATGTTCCAAGAAGTTTGATATGGAATTTGCCAAGACGGATTGTCTACTTTGGAACTTCTGTACCATCGATATTTAAAGGACTTTCAACAGA AGGAGTTCAGCACTGCTTTTGGAAAGGATTTGTTTGTGTGAGGGGGTTCGACCAGAAAACAAGAGCACCCCGACCTCTCAAGGCCAGATTACACTTTCCA GTAAGTAGGTTGGTAAAGACAAAGAACGAGAAAAAATGA
AA sequence Show only first row Show all	>Potri.008G025900.2 pacid=42805843 polypeptide=Potri.008G025900.2.p locus=Potri.008G025900 ID=Potri.008G025900.2.v4.1 annot-version=v4.1 MERFPIPQDIDFLPTMTGKPIPRSNVMLTDGQGNQLGRTNWQLGGFSSGCEQDVSSYSRVTQHADQIDQLVRNGGDNIRNAGIGHEVTRMGNNTGNHIES QTAGLNSSLLASILAYPNIATFTSPVAPPSASTCMVWRPSFPNLHAQVNNCSEPNLLLGNQARCWNLLSSSYISPQTHYEPPSPWLPHHDLNSSPRIEAD AASSVTTSFKFATVVPDQAKRLESKLPTTMSPSREKNSSGENEKNDLVVFNELKANQQNSEELSCNIADSSSAVISTPFEGEKDLARPDEQGIDLNKTPL QKPPKRRKHRPKVIVEGKPKRTPKAATTKNTDPKEKSTEKRKYVRKALKEPAIQQTDSAIETTPPSSAKRKYVRKKGLNESAVQHTDSIGETINTRPVKR KYVRKKGLNESAVQHTDSIGETINTCPVKRKYVRKKGINESANQHADSTVGIAHSSAEVGAKSCRRELRFDLETTTDERYSNAAAQEDMLNKKRGTFDLN TSLQVADSSTTTSQMNQHNSLQVENKQSGATSNQTPLMNQMGRSYTSISERHAVAAELTPRKIMHMENLNVNARDARGIGQVVFLEKRPERTRQITYQNT PQSVQMIPLYLIEGRGSKREHLHIEKTNTCTFQPVGSLFDEYYQSIPGVGCLEAQKRNKTENGTQTNTLSMSSCVATTKYPGEWYVHPTASQNLPKQCIS FNPILHLERTGESNGLAQVHNSLSPTTIAVCHNLSQTPLKTNHASDSQLQPETCNTEMSRIQQMSGATVSITIPSGKGRMPQQPKDILKEHQQPSAKRRG RPAKQKFSSTIEEIIHHMECLSLNARSKKIKNKEQNALVPYKGGGTLVPYDGFEFVKKHKPRPKVDLDPESDRVWKLLMGKEGSEGLERTDKGKEQWWEE ERKVFHGRVDSFIARMHLVQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLASLFPLKSRSNAAHDSHRKGIMVEEPDVCMQNPNDIIKWNSKF RYPLYNQSPITHHGSAEPQGESETWCIERASMVGAQSHSLEEEFVSSQDSFDSSTVQANGGVRSYSGSNSETEDPPTGCKPSTSHGLSFVDRLEMESPTL LEEFDGCESGSSLFHRGSGHENEQAEGIQNMQQGAGLERLGNLNCFSPYNKQFDYCNPQMQGKVVSCSNYGLLHMTSQSNAQQAEGFKLQSEDSISSWTS NSSRFNKEKAASCSSKTVGQKAASVGKKAAREYELPRYQEAPLAVQHSLYRKQSMYEQSSFQPYHENQVNERNETLQWQSMSAGGPVNLAETLPEKQNSY TQHISNVPRLTENILDFQRITSVNKQTPQENIVVDPNTKKKVHPDNRENLKSNANASKARKGKVESEKADVFDWDSLRKQVQTNGRKERTEDTMDSLDYE AVRCAGVNEISEAIKERGMNKILAERIQEFLNRLVREHGSIDLEWLRDVPPGKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL QPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSRPNCNACPMRAECRHFASAFTSARLALPGPETKDITTSTVPFMPE KSPSIVINPMPLLPPEDNQHKSVGFDIGSCEPIIEEPVTPDQEQTELAETDIEDFGEDPDEIPTIKLNMEEFTENLQNYIHSNMELQEYDMSKALVALDP NASIPTPKLKNVSRLRTEHQVYELPDSHPLLQGNLQMDKREPDDPSPYLLAIWTPGETANSIEPPEQQCQSREPNKLCNEKICFSCNSIREANSQTVRGT LLIPCRTAMRGSFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWNLPRRIVYFGTSVPSIFKGLSTEGVQHCFWKGFVCVRGFDQKTRAPRPLKARLHFP VSRLVKTKNEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	0	1
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	1.41	0.8451
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	6.92	0.7597
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	7.93	0.7358
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	9.00	0.7293	NTN2.2
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	9.38	0.7354
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	11.61	0.7380
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Potri.015G068600 [exp]	14.83	0.6821
AT3G33530			Transducin family protein / WD...		Potri.018G128400 [exp]	15.49	0.6960
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	16.49	0.6630
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	16.97	0.7379

Compare expression of checked genes

Potri.008G025900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.