Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24910 489 / 3e-169 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G24900 452 / 6e-155 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT2G26710 351 / 2e-115 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14690 305 / 6e-98 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT4G27710 304 / 2e-97 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT5G38450 303 / 4e-97 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT2G46950 305 / 6e-97 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 301 / 2e-96 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14630 299 / 1e-95 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT1G67110 299 / 2e-95 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026300 [exp] 1018 / 0 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.013G160800 [exp] 689 / 0 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 517 / 1e-180 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.010G116300 [exp] 488 / 2e-169 AT5G24910 376 / 3e-125 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 354 / 1e-116 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 343 / 1e-112 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 341 / 2e-111 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 332 / 4e-108 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.015G145100 [exp] 331 / 1e-107 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008423 [exp] 508 / 6e-177 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 343 / 5e-112 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10039234 [exp] 326 / 1e-105 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10017775 [exp] 327 / 8e-105 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026085 [exp] 322 / 2e-104 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10033555 [exp] 322 / 4e-104 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 317 / 3e-102 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10026084 [exp] 312 / 2e-100 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 311 / 3e-100 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10042487 [exp] 305 / 2e-97 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.008G026200.1 pacid=42807720 polypeptide=Potri.008G026200.1.p locus=Potri.008G026200 ID=Potri.008G026200.1.v4.1 annot-version=v4.1 ATGGAGCTGCTGCTGCTGCTGCCCAAGGTCACAGTTGCCGTTGCTCTTATCGGCCTTGTCAGCATTGTCATACGGATGTGTGATGCTCTAATATTCAAGC CAGAAAAGCTTCGTTCGAAGCTACGAAAGCAAGGTATCCGAGGTCCACCGCCTGCATTTTTGCTTGGAAACATACGGGACATTAAGAAGGCACGATCTAA GGTCTCAAAAGCATCACGGGAAGGAGAACAAGTGATAAGTCATAATTCTTCCAACACTCCCTTCTCATTCTTCGAGCAATGGAGCAAGAAATATGGTTCA ACATTCATGTTCTCGCTTGGGAACATACAGATATTGCATATGAACCATCCTGATGCGGTGAAGGAAATCAGCATCTGCACTTCCTTAGACTTGGGGAAGC CTTCTTACCAAGTAAAAGAGCGCGGTCCTCTGCTTGGCCAAGGTATTCTGACCTCAAATGGTGCTATATGGGCACATCAGAGAAAGATCCTTGCTCCTGA ATTTTACATGGAGAATGTCAAGAATTTCATGAGCATCATGGTCGAATCCTCGAATATAGTAGTTGATTCGTGGACTAAAAGGATTGAAAGTGAGGGAGGA GTTGTGGACATCAACGTTGATGAAGACATGAGAAGCTTCTCTGGAGATGTGATTTCAAAAGCATGTTTTGGGAGTAATTATGCCAAAGGAGAAGAGATAT TCCTCAAGCTTAGAGCTCTTCAAGGAGCCATGTCAAAGAAAGCTTTGTCTTCTGGGATTCCCATTTTGAGGGCTCTACCAACTAAGAGCAACAGAGAAGT TTGGAGATTAGAGAAAGAAGTGCGTGCTTTAATTTTGAAGGAAGTGAAGGAAGAAAAGGAACAAACATCGAAGGACCTGTTAGAAATAATCCTGAAAGGA GCCAAGGATAGTGAGACCAGCAAAGCTGAAATGGACCGTTTCGTTGTTGACAATTGCAAGAACATATACTTGGCTGGCTATGAAACAACTTCCGTCACTG CAACATGGACAATGATGCTTTTGGGATCAAATCCTGAATGGCAAGATAGAGTTCGAGCCGAGGTGCTTGAGGTCTGTGGGGGGCAAATGCCTGATGCTGG CATGGTTCGCAGGATGAAAACATTGACGATGGTGATTCATGAATCTCTGCGCCTCTACCCTCCAGTTTGTGTGATATCCAGGGAGGCGTTACAGGACATG AAATTTGGAGACATTTTTGTGCCCAAGGGTGTCAACGTTTGGACCTTGATTGTAACCCTACACCAAGACCCTGAAATATGGGGATCTGACGCTGACAAGT TCAATCCTGAGAGGTTTGCCAATGGGGTCAGTGGCGCCTGCAAGCATCCTCATGTTTACATGCCCTTTGGTGTTGGGCCACGGACATGTCTCGGACAGCA TTTTGCCATGGCAGAACTCAAAATCCTCATCGCAACTATCGTTTCCAATTTCTCCTTCACTATATCACCCAAATACATTCACGCCCCAGCTCTTAGGTTG GTTATAGAACCTGAACATGGAGTGAATCTTCTCATTAAAAAGCTGTGA
AA sequence Show only first row Show all	>Potri.008G026200.1 pacid=42807720 polypeptide=Potri.008G026200.1.p locus=Potri.008G026200 ID=Potri.008G026200.1.v4.1 annot-version=v4.1 MELLLLLPKVTVAVALIGLVSIVIRMCDALIFKPEKLRSKLRKQGIRGPPPAFLLGNIRDIKKARSKVSKASREGEQVISHNSSNTPFSFFEQWSKKYGS TFMFSLGNIQILHMNHPDAVKEISICTSLDLGKPSYQVKERGPLLGQGILTSNGAIWAHQRKILAPEFYMENVKNFMSIMVESSNIVVDSWTKRIESEGG VVDINVDEDMRSFSGDVISKACFGSNYAKGEEIFLKLRALQGAMSKKALSSGIPILRALPTKSNREVWRLEKEVRALILKEVKEEKEQTSKDLLEIILKG AKDSETSKAEMDRFVVDNCKNIYLAGYETTSVTATWTMMLLGSNPEWQDRVRAEVLEVCGGQMPDAGMVRRMKTLTMVIHESLRLYPPVCVISREALQDM KFGDIFVPKGVNVWTLIVTLHQDPEIWGSDADKFNPERFANGVSGACKHPHVYMPFGVGPRTCLGQHFAMAELKILIATIVSNFSFTISPKYIHAPALRL VIEPEHGVNLLIKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026200 [exp]	0	1
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	3.00	0.7246
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.014G134800 [exp]	9.59	0.7333	TIR1.2
					Potri.011G108200 [exp]	31.70	0.6113
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.014G153500 [exp]	33.04	0.6738	AXR1.3
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.002G207050 [exp]	38.14	0.6823
AT3G11420			Protein of unknown function (D...		Potri.008G058900 [exp]	63.21	0.6323
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Potri.014G029300 [exp]	84.29	0.6331
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069800 [exp]	100.00	0.6100
AT1G26640			Amino acid kinase family prote...		Potri.010G162900 [exp]	102.76	0.6144
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.005G077300 [exp]	113.36	0.6118

Compare expression of checked genes

Potri.008G026200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.