Plant FIBer expression Database

Potri.008G026900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10550 1081 / 0 MTM1, AtMTM1 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
AT5G04540 1045 / 0 Myotubularin-like phosphatases II superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G233600
[exp]
1445 / 0 AT3G10550 1077 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038641
[exp]
1217 / 0 AT3G10550 1133 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
Lus10037915
[exp]
1111 / 0 AT3G10550 1034 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF06602 Myotub-related Myotubularin-like phosphatase domain
Representative CDS sequence
>Potri.008G026900.1 pacid=42806023 polypeptide=Potri.008G026900.1.p locus=Potri.008G026900 ID=Potri.008G026900.1.v4.1 annot-version=v4.1
ATGTCCGCGCCACGGCGATCAACGTCGCTCAGAGACTCTTCCTCCGATTCTGAGCGGATGGAAGGCACAGGTAGCTGGGACGACGCTCTCGACTGGTTCA
AACTCGAGGTGCAGCATCCGGCGTCGCGCTCGGTCTCGCATCACGCTAATTACAAGTGCTTGCTTGAGGCAGAGCGTGTTCTTGTCGAGGGACGCGGTGT
TGTTCTTATCAATACTGACGAGGCAGGTACCTTGATAGTGACTAATTTCCGTCTTATTTTTCTGAGTGAGGGAACGGAAAATATTATTGCGCTTGGCACA
ATTCCGCTAGCAACAATTGAGAAGTTCAGCAAAATGGTTGTAAAAAATCAATCAGCCCCTCGTCATTCTGAGAAGACTCCATCACAGCGATTTCTCCAAG
TCATTGGGAAAGATATGAGAATTGTTGTTTTTGGTTTCCGGTCCAAAACAAAGCAGAGACGGGCCATATATGATGGGTTATTGAGGTGCACAAAACCATC
AAGACTCTGGGATCTTTATGCTTTTAGCTGTGGACCGTTCAAATTTACTAATGCAAACCCAAAAGTACGCTTGTTGAATGAGTATTTCCGTCTTCTAGGA
AAAGGCCTTTGTAGGGCATCAATGGATATGATCGACAATGGGTCATATACAATGTCTAATGAGCTGTGGAGAATCTGTAATGTAAATTCCAACTACATAA
TGTGCCCAAGTTACCCTTTTGCCTTGATTGTTCCAAAATCAATCAGTGATGAAGAAGTGATCCAGGCATCCAACTTTCGTTCCAAGGGTCGTTTACCTGT
AGTTTCTTGGTGTCATCCCGAAACTGGAGCAGTCCTTGCACGTTCATCCCAACCCTTAGTTGGTCTGATGATGAATATGAGGAGCAACACAGATGAAAAG
CTTGTTGCAGAACTTTGCTCTCAACTTGGTGATGAGAAAAAAAGGCGGAGGAAGTTATACATTGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAATG
TCGCAATGGGAGGTGGCTCAGAATCATCATCCAACTATTTTCAATCTGAGGTAGTTTTCTTTGGGATAGACAACATACATTCTATGAGAGAGAGTCTTTC
TCGGCTTAGGGACTACTTAGATGCTCATGGCACCACTTCATCAGATGGAACACTATCACTCTTGAGACATGGTGGTTGGACCTGGGGTGGAGGCAATCTC
AGCAATATGTCTGCCTCTGTTTCAACCCTCGGTGATAGTGGTTGGTTAATACATGTTCAAAGTGTCTTGGCTGGTTCAGCTTGGATTGCTGCTCGTGTTG
CTTTGGAATCAGCATCAGTACTTGTACATTGCAGTGATGGATGGGATAGAACGAGTCAGCTGGTTGCACTTGCTAATTTGTTGCTCGACCCATACTATCG
GACATTCACAGGGTTTCAGGCACTCATTGAAAAAGACTGGCTAGCATTTGGTCATCCATTTGCTGAGCGTGGGGGCATGCCAACTGTATCTGGGAGCAGC
GGAAGACCTCCTGATTTATGTAGGCAATCTTCTGTTGGGAGTTTTCCATTGCCACCCATGTGTCAGTCATCGGGATCATTTGCGCCACCAACTCCTAGTT
CTTCTCATGCACAGAACCAGCAGTCACCCATATTTTTGCAGTGGATTGATTGTGTTTCTCAATTATTGCGGATGTATCCCTTTGCTTTCGAGTTCTCCTC
GGCTTTCCTGGTGGACTTGTTGGACTGTGTCCTTTCATGTCGTTTCGGTAACTTCTTCTGCAACAGTGAGAAGGAAAGGCAGCAAGTTGGTATTTCTGAA
GCTTGTGGGTGCTTGTGGGCTTATTTGGCCGATCTGCGTTCTTCAGAAGGAAGGTCTCATGTGCACTGTAACCCTTTTTACAGTCCTCTGAAACATAATG
GTCCATTGTTACCTCCAGCAGCAGCCTTAGCCCCAACACTGTGGCCCCAATTCCACCTTCGGTGGGCTTGTCCTTCAGAAGCCCAAGCTGGGGAGCTTGA
AGCTCAATGTCGGATAATGTCTATAAAATTCTCCAAACTACAGAAGGCAAAAGAAGGGGCTGAGAAGAAAGCTAAAGAAACTGCAATTGTTGTGGAGTCA
TTGTCTGCAGAATTACGGAATGAGAAGCAGCTCAGTAGCTCTGCTATGGCCTTGGCCAAGAGGGCCAGCAAGGAAACTGCAGCCATAAAGCGAGCCATAC
AATCATTGGGATGCAAAGTTCATTATGCTAGTGGTGGTGATACTACTGTTGATATCGAGACCAGCCCTGTGAAAAATTCACAGAAATCTGTGTTTTCTCC
TTCTACAAGAGAATCTGTTGGTATTGTCCAACATGAAGATAAGTCAGATCTATCAGTTTCCATTTCAGTAGCGGCAGATGATGTTGTTTCCAATAATCCA
TTTGGTCGAGTGTGCGATACTTTATGCCCATTACGCACAAGAGATGGAGGCTGCAGGTGGCCAGATGCTGGTTGTGCTCAACTAGCTAGTCAGTTTATTG
GGGTGAAGGCAGACTATGAGGCACTCGATAGTCTTTCTATATACGAAGGTTATTTTAAGACAATGGAAGGAGGTAAATAG
AA sequence
>Potri.008G026900.1 pacid=42806023 polypeptide=Potri.008G026900.1.p locus=Potri.008G026900 ID=Potri.008G026900.1.v4.1 annot-version=v4.1
MSAPRRSTSLRDSSSDSERMEGTGSWDDALDWFKLEVQHPASRSVSHHANYKCLLEAERVLVEGRGVVLINTDEAGTLIVTNFRLIFLSEGTENIIALGT
IPLATIEKFSKMVVKNQSAPRHSEKTPSQRFLQVIGKDMRIVVFGFRSKTKQRRAIYDGLLRCTKPSRLWDLYAFSCGPFKFTNANPKVRLLNEYFRLLG
KGLCRASMDMIDNGSYTMSNELWRICNVNSNYIMCPSYPFALIVPKSISDEEVIQASNFRSKGRLPVVSWCHPETGAVLARSSQPLVGLMMNMRSNTDEK
LVAELCSQLGDEKKRRRKLYIADARPRKNALANVAMGGGSESSSNYFQSEVVFFGIDNIHSMRESLSRLRDYLDAHGTTSSDGTLSLLRHGGWTWGGGNL
SNMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALESASVLVHCSDGWDRTSQLVALANLLLDPYYRTFTGFQALIEKDWLAFGHPFAERGGMPTVSGSS
GRPPDLCRQSSVGSFPLPPMCQSSGSFAPPTPSSSHAQNQQSPIFLQWIDCVSQLLRMYPFAFEFSSAFLVDLLDCVLSCRFGNFFCNSEKERQQVGISE
ACGCLWAYLADLRSSEGRSHVHCNPFYSPLKHNGPLLPPAAALAPTLWPQFHLRWACPSEAQAGELEAQCRIMSIKFSKLQKAKEGAEKKAKETAIVVES
LSAELRNEKQLSSSAMALAKRASKETAAIKRAIQSLGCKVHYASGGDTTVDIETSPVKNSQKSVFSPSTRESVGIVQHEDKSDLSVSISVAADDVVSNNP
FGRVCDTLCPLRTRDGGCRWPDAGCAQLASQFIGVKADYEALDSLSIYEGYFKTMEGGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10550 MTM1, AtMTM1 Arabidopsis thaliana myotubula... Potri.008G026900
[exp]
0 1
AT3G42670 CLSY1, CLSY, CH... CLASSY 1, CLASSY1, chromatin r... Potri.010G183832
[exp]
8.48 0.8398
AT5G01110 Tetratricopeptide repeat (TPR)... Potri.001G139300
[exp]
8.48 0.8465
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.012G110400
[exp]
8.48 0.8202
AT5G48570 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-... Potri.002G117200
[exp]
9.48 0.8459
AT3G44880 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, AC... Potri.009G004100
[exp]
10.24 0.8265
Potri.019G081450
[exp]
12.00 0.8571
AT3G54610 ATGCN5, HAG1, H... HISTONE ACETYLTRANSFERASE 1, g... Potri.005G217400
[exp]
12.80 0.7504
AT3G57570 ARM repeat superfamily protein... Potri.006G054100
[exp]
14.49 0.7977
AT3G15280 unknown protein Potri.001G398300
[exp]
15.19 0.8052
AT1G05860 unknown protein Potri.010G180200
[exp]
16.30 0.8383

Potri.008G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.