Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24350 429 / 2e-151 Phosphorylase superfamily protein (.1.2) AT4G24340 425 / 7e-150 Phosphorylase superfamily protein (.1) AT4G28940 240 / 5e-77 Phosphorylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G028700 [exp] 512 / 0 AT4G24350 436 / 3e-154 Phosphorylase superfamily protein (.1.2) Potri.008G028500 [exp] 478 / 7e-171 AT4G24350 418 / 2e-147 Phosphorylase superfamily protein (.1.2) Potri.006G161538 [exp] 230 / 3e-73 AT4G28940 457 / 2e-162 Phosphorylase superfamily protein (.1) Potri.013G082800 [exp] 199 / 2e-61 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G081233 [exp] 199 / 2e-61 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G082066 [exp] 199 / 3e-61 AT4G24340 201 / 6e-62 Phosphorylase superfamily protein (.1) Potri.013G082700 [exp] 198 / 4e-61 AT4G24340 179 / 1e-53 Phosphorylase superfamily protein (.1) Potri.013G080400 [exp] 195 / 4e-60 AT4G24350 205 / 4e-64 Phosphorylase superfamily protein (.1.2) Potri.013G101000 [exp] 183 / 3e-55 AT4G24340 133 / 5e-36 Phosphorylase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028834 [exp] 410 / 1e-137 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10023668 [exp] 209 / 9e-65 AT4G28940 371 / 6e-128 Phosphorylase superfamily protein (.1) Lus10034939 [exp] 185 / 5e-56 AT4G28940 359 / 4e-124 Phosphorylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [poplar] [flax] PUP PF01048 [poplar] [flax] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.008G028600.1 pacid=42807615 polypeptide=Potri.008G028600.1.p locus=Potri.008G028600 ID=Potri.008G028600.1.v4.1 annot-version=v4.1 ATGGCAGCAAAACTTGTAACACTACCATATTTTGCATCGGTAGTCTTGACTTGTTTGTTGGTTGTATCTGTGTCAGCTATACCATCAAAGAAGATAAATT CTTTGAAACTAATAAAGCAAGTTAACAGCAAAGGGCCTTATATTGGTCTCCTCACTGTGTTTCCACCAGAAGAGAATGCCTTTTTAGGGACTGCGGATTT CAAGCCTAATCCTGAGCACCCTTTCGTGAACCTGTCAGGGCGAAGATATCGAGTCGGAACAATCTACGGGAAGAAAGTCATCTATGTGAGATGTGGGATT GGAATGGTCAATGCTGCTGCGGTGACACAACAAATGCTGGATCTGTTTGATGTAGCCGGGATTGTCCATTTTGGGATTTCTGGCAATATCAACAATTCTA TGTCCATTGGAGATGTTAGCATCCCCAAACAGTTTGCTAATACTGGCCTTTGGAATTGGCTGAACCCAAAAGGAACTGTGGACCCTGATGATGTCGCTCA ATTAGAGGTTGGAAAATATAATGTGCCTAAAGGAGATGGTGTGAATCTGTTAGGAAAACTCAGTTACAGTCCCGAGCAGTTATTTTCAGTGTCAAGGGAG CCTAATGATGCTACGACCCTGTTTTGGGCAGGAGTGAGTCAGCATTGGCTTAAGCTCGCTTCTAGTTTGGAGGGGATGGAACTGGAGAAGTGTGTTAATT CAAGCTTGTGCCTTCCACAAAAGCCCAAGCTAGTTGTTGGGCTCAAGGGCTCAACCGCAGACATTTTCGTGGACAACGCAGCTTACAGGGATTTCCTTTA TAAGGCTTTTGGGGTTTCATCAGCTGATATGGAGAGCTCTGCTGTAGTGATGACTTGCTTGTCAAATGGTATCCCTGTGATTGTCATCAGAGGGATGTCA GATTTAGCTGGAGGACAATCAGGAGAGAATGCAATGGACACATATGGTTCGCTTGCAGCTCTGAATACTGCCAAGGCTGTTCTTAAATTTATCAGCAAGC TACCGGGATATAATTCTCGATAG
AA sequence Show only first row Show all	>Potri.008G028600.1 pacid=42807615 polypeptide=Potri.008G028600.1.p locus=Potri.008G028600 ID=Potri.008G028600.1.v4.1 annot-version=v4.1 MAAKLVTLPYFASVVLTCLLVVSVSAIPSKKINSLKLIKQVNSKGPYIGLLTVFPPEENAFLGTADFKPNPEHPFVNLSGRRYRVGTIYGKKVIYVRCGI GMVNAAAVTQQMLDLFDVAGIVHFGISGNINNSMSIGDVSIPKQFANTGLWNWLNPKGTVDPDDVAQLEVGKYNVPKGDGVNLLGKLSYSPEQLFSVSRE PNDATTLFWAGVSQHWLKLASSLEGMELEKCVNSSLCLPQKPKLVVGLKGSTADIFVDNAAYRDFLYKAFGVSSADMESSAVVMTCLSNGIPVIVIRGMS DLAGGQSGENAMDTYGSLAALNTAKAVLKFISKLPGYNSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028600 [exp]	0	1
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.004G209200 [exp]	6.70	0.9524
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	10.48	0.9510
AT1G32250			Calcium-binding EF-hand family...		Potri.014G030200 [exp]	12.00	0.9449
					Potri.019G032001 [exp]	12.60	0.9046
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.017G071000 [exp]	13.41	0.9447
AT3G20395			RING/U-box superfamily protein...		Potri.001G435800 [exp]	15.16	0.9300
					Potri.011G102400 [exp]	16.73	0.9381
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256700 [exp]	19.36	0.9430
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340300 [exp]	19.44	0.9419
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.001G189900 [exp]	22.09	0.9372

Compare expression of checked genes

Potri.008G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.