Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10540 810 / 0 3-phosphoinositide-dependent protein kinase (.1) AT5G04510 800 / 0 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT3G08720 224 / 2e-67 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 223 / 5e-67 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G58140 205 / 2e-57 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G48490 196 / 8e-54 Protein kinase superfamily protein (.1.2.3) AT1G45160 194 / 1e-53 Protein kinase superfamily protein (.1.2) AT1G16440 184 / 4e-52 RSH3 root hair specific 3 (.1) AT5G62310 188 / 2e-51 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G30270 181 / 3e-51 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232800 [exp] 917 / 0 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.006G109600 [exp] 213 / 5e-63 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 211 / 2e-62 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 207 / 6e-61 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.002G263000 [exp] 201 / 1e-55 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G342000 [exp] 197 / 1e-54 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.006G062800 [exp] 184 / 1e-52 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.004G209700 [exp] 189 / 6e-52 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.012G127800 [exp] 186 / 1e-50 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017448 [exp] 821 / 0 AT3G10540 821 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10028834 [exp] 815 / 0 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10038647 [exp] 796 / 0 AT3G10540 813 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10037921 [exp] 686 / 0 AT3G10540 694 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10025213 [exp] 222 / 5e-64 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 210 / 5e-61 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 202 / 2e-57 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10027196 [exp] 196 / 6e-54 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 194 / 3e-53 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 193 / 3e-53 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0266 [poplar] [flax] PH PF14593 [poplar] [flax] PH_3 PH domain
Representative CDS sequence Show only first row Show all	>Potri.008G028800.1 pacid=42808261 polypeptide=Potri.008G028800.1.p locus=Potri.008G028800 ID=Potri.008G028800.1.v4.1 annot-version=v4.1 ATGTTGGAAATGGAGAGGGATCCTGATTCAAAGTCGAGGATTCAAAACAGCAATTCACCTTCTTCATCATCTAATAACAATAATGGGAATGTGCAGAGAT CTAAAAGCTTTGCATTTAGAGCTCCGCAAGAGAATTTCACTATTCAGGATTTTGAGCTTGGCAAGATCTATGGCGTTGGATCTTATTCAAAGGTAGTGAG AGCAAAGAAGAAGGACACAGGAATTGTATATGCCTTGAAGATCATGGACAAAAAATTCATCACCAAAGAAAATAAAACAGCTTATGTGAAGCTAGAACGC ATAGTGCTTGATCAATTGGATCATCCAGGAATCGTGCGTCTATTTTTTACTTTTCAGGATAATTATTCTCTGTACATGGCACTTGAATCCTGTGAAGGAG GAGAACTTTTTGATCAAATAACCAGAAAAGGCCGTCTATCAGAGGATGAAGCTCGCTTTTATGCTGCAGAAGTTGTGGATGCTCTTGAATACATACATAG TATGGGATTAATTCATCGGGATATAAAGCCAGAGAACTTGTTATTTACTGCAGACGGACACGTTAAAATTGCTGATTTTGGAAGTGTGAAGCCCATGCAG GATAGTTGCATCACTGTCCTTCCGAATGCAGCTTCAGACGATAAGGCTTGCACATTTGTGGGAACAGCTGCATATGTCCCTCCAGAAGTCCTTAACTCTT CTCCTGCAACTTTCGGAAATGACCTGTGGGCACTTGGCTGCACTTTGTACCAGATGCTTTCAGGGACTTCTCCTTTCAAAGATGCAAGTGAATGGCTTAT ATTTCAAAGAATTATTGCTCGGGATTTAAGATTTCCAGATTATTTTTCAGAAGAAGCGAGAGACCTCATTGATCACTTATTAGATATAGATCCCAGCAGA AGACCGGGTGCTGGACGTGGTGGTTATGCTGTGCTCAAGAATCATCCATTCTTTGAGGGAGTTGACTGGAAGAATTTAAGAGGAGAAACCCCTCCAAAAC TTGTTTTGGAACCAATGGCGCAATCCGGTGACAATGACCATGACCCTGGGTCTCCATTTAACCCCACACACATTGGTGACAGTTCAATGACACAAAATGA TGCGAATGTTGGAGTCTCATCATCTGCTGAAGCAACTTCACACATAACTAGACTTGCTTCAATTGACTCCTTTGATTCTAAATGGCAACAGTTTTTGGAT CCAGGGGAATCTGTTGTAATGATCTCGATGGTGAAGAAATTACAGAAACTGACGAGCAAGAAGGTGCAGCTTATCCTTACTAACAAGCCAAAGTTGATCT ACGTGGACCCTTCGAAGTTAATAGTGAAGGGAAATATAATTTGGTCTGACAATTCTGATGACCTGAGTGTCCAAGTTACAAGTCCTTCACATTTTAAGAT CTGTACGCCGAAGAAGGTAAGGTCATTTGAAGATGTTAAGCAGAGAGCGTGGCAGTGGAAAAAGGCCATTGAGAGTCTTCAAAACCAGTGA
AA sequence Show only first row Show all	>Potri.008G028800.1 pacid=42808261 polypeptide=Potri.008G028800.1.p locus=Potri.008G028800 ID=Potri.008G028800.1.v4.1 annot-version=v4.1 MLEMERDPDSKSRIQNSNSPSSSSNNNNGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLER IVLDQLDHPGIVRLFFTFQDNYSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHSMGLIHRDIKPENLLFTADGHVKIADFGSVKPMQ DSCITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDLRFPDYFSEEARDLIDHLLDIDPSR RPGAGRGGYAVLKNHPFFEGVDWKNLRGETPPKLVLEPMAQSGDNDHDPGSPFNPTHIGDSSMTQNDANVGVSSSAEATSHITRLASIDSFDSKWQQFLD PGESVVMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNSDDLSVQVTSPSHFKICTPKKVRSFEDVKQRAWQWKKAIESLQNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10540			3-phosphoinositide-dependent p...		Potri.008G028800 [exp]	0	1
AT2G40410			Staphylococcal nuclease homolo...		Potri.008G074800 [exp]	2.00	0.8700
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.004G013400 [exp]	5.47	0.8111	PDT1
AT5G40250			RING/U-box superfamily protein...		Potri.017G072300 [exp]	5.74	0.7510
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.012G082200 [exp]	6.92	0.8026
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.010G119400 [exp]	16.09	0.7971
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	18.60	0.8144
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Potri.010G125200 [exp]	20.85	0.8005	HMT4
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.015G034700 [exp]	23.49	0.7972	Pt-NCPGS.3
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.003G122900 [exp]	23.83	0.7947
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.014G070900 [exp]	24.49	0.7516

Compare expression of checked genes

Potri.008G028800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.