Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04490 118 / 6e-33 VTE5 vitamin E pathway gene 5 (.1) AT5G58560 66 / 3e-13 FOLK farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232600 [exp] 153 / 2e-46 AT5G04490 320 / 2e-109 vitamin E pathway gene 5 (.1) Potri.009G074800 [exp] 61 / 2e-11 AT5G58560 354 / 8e-123 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.001G279900 [exp] 60 / 2e-11 AT5G58560 333 / 8e-116 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.009G074700 [exp] 57 / 3e-10 AT5G58560 332 / 3e-115 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017447 [exp] 132 / 3e-38 AT5G04490 330 / 3e-113 vitamin E pathway gene 5 (.1) Lus10028835 [exp] 89 / 1e-21 AT5G04490 280 / 1e-93 vitamin E pathway gene 5 (.1) Lus10031858 [exp] 54 / 2e-09 AT5G58560 341 / 1e-118 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Lus10031288 [exp] 48 / 7e-07 AT5G58560 321 / 1e-109 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G029000.2 pacid=42808016 polypeptide=Potri.008G029000.2.p locus=Potri.008G029000 ID=Potri.008G029000.2.v4.1 annot-version=v4.1 ATGTATGGGAGTGCAGCTAGCTTTTCTCTTCTTGATTATACATCAGAACTGAAGATAATTGTATACCTATTTCAGAGGATGAATAAATGGCTTGTCCTTT CGATTACGCACAGGACGGCCTCGTGGAGGGCAGATGATAATGGCATCAACTTAAGAAAGGAATCATGGCACTCTTATCCTTCACTCCTAGCTGGAGCTTA CGGTCTCGTTCTGACTTTTGATACTGTCACTCAGCGAAACCTGATTCAACAAAGTCTCAGCAGAAAATTAGCTCATATAATTTCAGGCTCGCTTTTTGCT GCTTGTTGGTCAATTTTCAGCACAACAACACAGGCTCGCTACTTTGCTCCTGAGGTACCTCTCGTGAATTGCTTGAGGCTGGTTATACATGGCTTCTCTT TGGTTACTAATGAAGGGCTCATTAAATCTGTCACTCGAGAAGGAGATCCACAGTAA
AA sequence Show only first row Show all	>Potri.008G029000.2 pacid=42808016 polypeptide=Potri.008G029000.2.p locus=Potri.008G029000 ID=Potri.008G029000.2.v4.1 annot-version=v4.1 MYGSAASFSLLDYTSELKIIVYLFQRMNKWLVLSITHRTASWRADDNGINLRKESWHSYPSLLAGAYGLVLTFDTVTQRNLIQQSLSRKLAHIISGSLFA ACWSIFSTTTQARYFAPEVPLVNCLRLVIHGFSLVTNEGLIKSVTREGDPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Potri.008G029000 [exp]	0	1
					Potri.005G031948 [exp]	8.48	0.9244
AT5G05800			unknown protein		Potri.010G045701 [exp]	14.69	0.9244
					Potri.002G132850 [exp]	17.20	0.9194
					Potri.009G097750 [exp]	17.94	0.9058
					Potri.004G075950 [exp]	21.63	0.9107
					Potri.019G014330 [exp]	27.34	0.9129
					Potri.003G073450 [exp]	31.84	0.8817
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.001G308050 [exp]	31.85	0.8766
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.015G102100 [exp]	33.98	0.8634
AT5G52450			MATE efflux family protein (.1...		Potri.006G171240 [exp]	35.09	0.6784

Compare expression of checked genes

Potri.008G029000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.