Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10530 732 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 58 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 57 / 2e-08 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 57 / 3e-08 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G23430 57 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G21540 54 / 2e-07 transducin family protein / WD-40 repeat family protein (.1) AT5G25150 54 / 3e-07 TAF5 TBP-associated factor 5 (.1) AT1G61210 54 / 3e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 53 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 51 / 1e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232500 [exp] 932 / 0 AT3G10530 727 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G171600 [exp] 56 / 6e-08 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 55 / 9e-08 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.006G045800 [exp] 54 / 1e-07 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 54 / 2e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 53 / 2e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 53 / 3e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 53 / 6e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 52 / 8e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037324 [exp] 736 / 0 AT3G10530 718 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024656 [exp] 535 / 0 AT3G10530 483 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035740 [exp] 463 / 3e-160 AT3G10530 431 / 2e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032289 [exp] 441 / 4e-151 AT3G10530 443 / 4e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035742 [exp] 166 / 1e-48 AT3G10530 214 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 61 / 1e-09 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 57 / 1e-08 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026837 [exp] 56 / 6e-08 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 55 / 2e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10021059 [exp] 54 / 2e-07 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08149 [poplar] [flax] BING4CT BING4CT (NUC141) domain
Representative CDS sequence Show only first row Show all	>Potri.008G029100.1 pacid=42806232 polypeptide=Potri.008G029100.1.p locus=Potri.008G029100 ID=Potri.008G029100.1.v4.1 annot-version=v4.1 ATGGGTGCGAAACAAGAAAATGGTGATCCTGAGAATATTTTACCTCCTATTGAGCAGGAATTGTCTCACGAGTTGGATACGAAAGTAAAGAAGTATCTTA GAGGAGAAGGGGCTAATTTGGAGGTTTTAAAAGACAAAAAGCTTAAGGGTCAACTTTCTGTTAGGGAAGATTTATATGGAATATCTGCAAAAGCTGCTGC CAAGGCTGAAAAGTGGCTTATGCCAAGCAAGGGAGGCTATCTGGAGGCTGAGGGTATAGAGAAGACATGGAGGATCAAACAGGACGCAATCAATCATGAA GTTGATATCTCAAGCGCAAAGAATCAATATGATATAGTCTTGCCAGATTTTGGTCCATACACTCTGGATTTCACCTCAAGTGGTCGATACATGGCAGCTG CTGGTCGCAAGGGCCACTTGGCGGTTGTTGACATGAAGAACATGAGCTTAATAAAAGAGATGCAGGTTAGAGAAACAGTGCGAGATATCGTGTTTTTGCA CAATGAGCTGTTCTTTGCTGCTGCCCAGAAAAAGTACCCGTACATTTATAACAGAGATGGTGTCGAACTTCATTGTTTAAAGGAACATGGTGCGGTGACA AGGCTTCAGTTTTTGAAAAACCACTTTCTTTTGGTGTCAATAAACAAATTTGGGCAGCTGCGATACCAAGATGTTACAATGGGTGAGATGATAAGCAATT TCCGGACAGGTTTAGGCCGTACTGATGTGATGCTGGTCAACCCTCTCAACGGGGTTGTTGCTTTGGGTCATTCAGGTGGTACAGTAAGCATGTGGAAGCC CACCAGTGCGGTTCCCCTTGTCAAGATGCTGTGTCATCCTGGACCTATCACAGCAATGGCATTTCATCCTAATGGCAATCTCATGGCCACTTCTGGAAAA GAAAAGAAAATTAAGATTTGGGACTTGAGGAAATTCGAGGTTCTCCAAATTATACCAGGCCATGCAAAAACCTTAGACTTCAGTCAAAAAGGTTTACTAG CTGCTGGAACTGGATCGTATGTTCAGATTCTAGGAGATTTCTCAGGATCACGGATCTATAGTAGATATATGGGACATTCCATTGTGAAAGGTTACCAGAT AGGGAAAGTGGCATTTCGACCATATGAAGATGTTCTAGGTATAGGGCACTCCATGGGATGGTCTTCAATTCTTATCCCAGGTTCAGGGGAACCAAACTTC GACACATGGTTAGCAAACCCATTTGAAACATCTAAACAACGAAGAGAGAAGGAAATCCACTCTCTTCTTGACAAGCTCCCACCCGAGACCATCATGCTGG ACCCTTCAAAGATCGGTACAGTGAAGTCGGCAAAGAAGAAAGATAAACCAACAAAGAAGGAGAAGGAGGCGGAGATGGAAGCTGTTGTTGAAGCAGCAAA GGGAACTGCCATTAGGAAGAAAACAAAGGGGAAAAATAAGCCAAGCAAAATAGCGGTAAAGAAAAAGAAGATTGTTGAAACAGCCAAGAGACCTTTCTTG GAGAAACAAATGGAGGAAGAAAACGTGGCTAAGAAGAAGCAGAAAATCAGTGAGGAAATTTCATTACCTACGGCTTTGCAAAGATTTGCCCGTAAGAAAG CAACGGCATGA
AA sequence Show only first row Show all	>Potri.008G029100.1 pacid=42806232 polypeptide=Potri.008G029100.1.p locus=Potri.008G029100 ID=Potri.008G029100.1.v4.1 annot-version=v4.1 MGAKQENGDPENILPPIEQELSHELDTKVKKYLRGEGANLEVLKDKKLKGQLSVREDLYGISAKAAAKAEKWLMPSKGGYLEAEGIEKTWRIKQDAINHE VDISSAKNQYDIVLPDFGPYTLDFTSSGRYMAAAGRKGHLAVVDMKNMSLIKEMQVRETVRDIVFLHNELFFAAAQKKYPYIYNRDGVELHCLKEHGAVT RLQFLKNHFLLVSINKFGQLRYQDVTMGEMISNFRTGLGRTDVMLVNPLNGVVALGHSGGTVSMWKPTSAVPLVKMLCHPGPITAMAFHPNGNLMATSGK EKKIKIWDLRKFEVLQIIPGHAKTLDFSQKGLLAAGTGSYVQILGDFSGSRIYSRYMGHSIVKGYQIGKVAFRPYEDVLGIGHSMGWSSILIPGSGEPNF DTWLANPFETSKQRREKEIHSLLDKLPPETIMLDPSKIGTVKSAKKKDKPTKKEKEAEMEAVVEAAKGTAIRKKTKGKNKPSKIAVKKKKIVETAKRPFL EKQMEEENVAKKKQKISEEISLPTALQRFARKKATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10530			Transducin/WD40 repeat-like su...		Potri.008G029100 [exp]	0	1
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	3.74	0.9044
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	7.34	0.9053
AT5G41270			unknown protein		Potri.003G127200 [exp]	7.48	0.8679
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	8.77	0.8766
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	8.83	0.8865
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	9.16	0.8937
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	9.74	0.8638
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Potri.009G168100 [exp]	9.79	0.8737
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	9.94	0.8792
AT3G51320			Pentatricopeptide repeat (PPR)...		Potri.005G109800 [exp]	10.00	0.8407

Compare expression of checked genes

Potri.008G029100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.