Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52190 489 / 1e-173 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT5G50650 147 / 2e-40 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 147 / 2e-40 Transducin/WD40 repeat-like superfamily protein (.1) AT2G01470 137 / 2e-36 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT1G73720 48 / 8e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G71840 48 / 8e-06 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 45 / 3e-05 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 45 / 4e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G37160 42 / 0.0009 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G53390 42 / 0.001 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232400 [exp] 676 / 0 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G130300 [exp] 166 / 1e-47 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G111800 [exp] 155 / 3e-43 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.011G156900 [exp] 48 / 7e-06 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 47 / 1e-05 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 46 / 2e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 46 / 3e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 44 / 0.0001 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G045800 [exp] 44 / 0.0002 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017451 [exp] 575 / 0 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10037923 [exp] 572 / 0 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 568 / 0 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10038651 [exp] 557 / 0 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10035728 [exp] 164 / 2e-46 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10037313 [exp] 162 / 9e-46 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10023381 [exp] 51 / 8e-07 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10038425 [exp] 51 / 9e-07 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 47 / 1e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 46 / 5e-05 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G029200.2 pacid=42806840 polypeptide=Potri.008G029200.2.p locus=Potri.008G029200 ID=Potri.008G029200.2.v4.1 annot-version=v4.1 ATGGAGTCAGGACAGGGAACTGTGACATGCGGGTCATGGATCCGGAGACCCGAGAACTTGAATCTTGCTGTGCTTGGCAGGTCATCGAAGAAGAAAAATT CTGCCTCTCCTTCTGTTCTCGAGATCTTCTCTTTTGACACCGAGACAACTTCTCTCTCAACCTCTCCTCAGGTAACTTATGTGTTTGAAGAAACAGAAGG TGAACTGGTGACAATTGCAGTGCATCCAAGTGGAGATGATCTTGTGTGTTCTTCAACTAAAGGTGGATGCAAATTGTTTGAGTTGCAGTGTCAAGAAACA AATTTAAAGTTGCTAGCCAAAGATTTACCTCCTCTCCAAGATGTTGGTCCACAGACATGCATGGCTTTCAGTGTTGATGGGTCTAAGTTTGCCACTGGTG GGGTGGATGGGCGTTTAAGAATTTTGGAGTGGCCAAGTTTGCGCATCATTTTGGATGAACCAAAAGCACACAAATCTGTCAGGGATATGGATTTTAGCCT GGATTCAGAGTTCCTAGCGTCAACATCTACTGATGGTTCAGCAAGAATATGGAAAGCAGAAGATGGTTCACCTGTGGTTTCTTTGACTCGCAACTCAGAT GAAAAGATTGAATTGTGCCGCTTCTCCAAGGATGGGACAAAACCATTTTTATTTTGTGCTGTGCAGAAAGGTGATAAAGCTGTCACTGCAGTTTATGACA TAAGTACATGGAATAAAATTGGGTATAAGAGGCTACTTAGAAAGCCTGCTTCCATCATGTCTATCAGCCTGGACGGGAAATATCTTGCTTTAGGAAGCAA GGATGGAGACGTGTGTGTAGCGGAAGTTAAGAAAATGGAGGTTTCCCACTTGAGTAAGAGGCTGCACCTGGGTACATGTATCACGTCACTAGAGTTCTGT CCCGGTCAAAGGGTTGTGCTCACTACTTCCGATGAATGGGGAGCAGTGGTGACTAAGTTGAATGTTCCTGCAGATTGGAAAGAGTGGCAGATATATTTAC TGCTAGTAGTACTATTTTTGGCATCTGCTGTTGCATTTTACATTTTCTTTCAGAAGTCTGATTCATTTTGGAACGTTCCACCTGGAAGAGATCAACCTGG GAAACAGTTCGAAATTTTAGATCCACAGTACTCTGAAGATGCATTTGGGCCTGTAGATATGTGA
AA sequence Show only first row Show all	>Potri.008G029200.2 pacid=42806840 polypeptide=Potri.008G029200.2.p locus=Potri.008G029200 ID=Potri.008G029200.2.v4.1 annot-version=v4.1 MESGQGTVTCGSWIRRPENLNLAVLGRSSKKKNSASPSVLEIFSFDTETTSLSTSPQVTYVFEETEGELVTIAVHPSGDDLVCSSTKGGCKLFELQCQET NLKLLAKDLPPLQDVGPQTCMAFSVDGSKFATGGVDGRLRILEWPSLRIILDEPKAHKSVRDMDFSLDSEFLASTSTDGSARIWKAEDGSPVVSLTRNSD EKIELCRFSKDGTKPFLFCAVQKGDKAVTAVYDISTWNKIGYKRLLRKPASIMSISLDGKYLALGSKDGDVCVAEVKKMEVSHLSKRLHLGTCITSLEFC PGQRVVLTTSDEWGAVVTKLNVPADWKEWQIYLLLVVLFLASAVAFYIFFQKSDSFWNVPPGRDQPGKQFEILDPQYSEDAFGPVDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	0	1
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	6.40	0.7302
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.016G115400 [exp]	8.00	0.7126
AT5G09680		RLF	reduced lateral root formation...		Potri.001G263800 [exp]	14.31	0.6960
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.007G147200 [exp]	16.73	0.6500
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.003G002500 [exp]	22.80	0.7067
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	33.22	0.6841
AT4G10170			SNARE-like superfamily protein...		Potri.003G048600 [exp]	33.46	0.6656
AT2G25740			ATP-dependent protease La (LON...		Potri.018G046700 [exp]	39.59	0.6334
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G252600 [exp]	39.91	0.6659
AT4G38380			MATE efflux family protein (.1...		Potri.009G143400 [exp]	41.42	0.6655

Compare expression of checked genes

Potri.008G029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.