Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52180 461 / 1e-162 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) AT3G10940 160 / 2e-46 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT3G01510 122 / 2e-30 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232200 [exp] 608 / 0 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.019G048600 [exp] 149 / 3e-42 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.001G349000 [exp] 125 / 3e-31 AT3G01510 775 / 0.0 like SEX4 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038652 [exp] 516 / 0 AT3G52180 456 / 8e-161 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10037924 [exp] 511 / 0 AT3G52180 464 / 2e-163 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10034214 [exp] 146 / 5e-41 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 145 / 6e-41 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10008779 [exp] 116 / 3e-28 AT3G01510 703 / 0.0 like SEX4 1 (.1) Lus10022236 [exp] 99 / 2e-22 AT3G01510 567 / 0.0 like SEX4 1 (.1) Lus10037220 [exp] 42 / 0.0005 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.008G029300.1 pacid=42808520 polypeptide=Potri.008G029300.1.p locus=Potri.008G029300 ID=Potri.008G029300.1.v4.1 annot-version=v4.1 ATGAACTGCCGTCACTGTCTCCCAAGATCATCCTCTGCCTTGCCTTTGCAAGGCTTCAATTTTTACCAAAGAAGACCATCTTCACCATCATTATTCTCTC TTAACATGGCAGGAACCAAGAATTCTAGTGATTTGCGGTTACGTGTATCTGTGAAGGCAATTCCCAGCTCACCATCCAGTGCTGAGATGAGCGGTGCTGA TGCTGAGGAAGAAGAGGAGAAATCTGAGATATACAGTCATGACATGACTGAAGCTATGGGGGCTGTTTTGACCTATAGGCACGAACTAGGAATGAACTAT AACTTCATTCGTCCAGATTTGATTGTCGGATCATGCCTACAGACTCCTGAAGATGTTGACAAGCTTCGAAAAATTGGAGTCAAAACCATATTTTGCTTAC AGCAAGATCCAGACTTGGAATATTTCGGGGTAGATATTAGTGCCATTCAAGACTATGCCAAGGCATGTGGTGACATTCAGCATTTGCGGGCACAGATAAG GGATTTTGATGCATTTGATTTACGGAAAAGGATTCCAGCTGTCGTCAGCAAATTATACAAAGCCATAAATCGAAATGGAGGTGTGGCATATATACATTGC ACTGCCGGACTGGGCAGAGCACCTGCTGTTGCGATGGCATACATGTTCTGGTTTCAGGGCTACAAGCTCAGTGATGCCTGTGATTTGCTCCTGAGCAAAC GCTCGTGCTTCCCAAATCTGGATGCTATCAAAAATTCAACCGCAGATATACTTACAGGCCTTAGAAAGAAGCTTGTCACTTTGAAATGGAAAGATGACAA GTGTTGCACAGTGGAAATTTCTGGGCTTGACATTGGATGGGGCCAGAGGATACCCTTAGAATTAGATGAGGAGCAGGGTTTTTGGATTCTCAAGAGGGAA TTGCTGGAGGGACGCTATGAATACAAGTACATTGTTGATGGTGAGTGGACCATCAACAAACATGAGCTAGTTACCACTCAGAACAAAGATGGCCATGTCA ACAATTATGTTCAGGTTCTTGATGATGATACAGACAGTGCTAACGCTGCACTACAGAAGAGTTTAACCGGTGATGATCCAAATCTAACAGGAGACGAACG GTTGAGAATTAGAAGGTTTCTGGAAGCTCTTCCTGAAGATGAAGGGTGA
AA sequence Show only first row Show all	>Potri.008G029300.1 pacid=42808520 polypeptide=Potri.008G029300.1.p locus=Potri.008G029300 ID=Potri.008G029300.1.v4.1 annot-version=v4.1 MNCRHCLPRSSSALPLQGFNFYQRRPSSPSLFSLNMAGTKNSSDLRLRVSVKAIPSSPSSAEMSGADAEEEEEKSEIYSHDMTEAMGAVLTYRHELGMNY NFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISAIQDYAKACGDIQHLRAQIRDFDAFDLRKRIPAVVSKLYKAINRNGGVAYIHC TAGLGRAPAVAMAYMFWFQGYKLSDACDLLLSKRSCFPNLDAIKNSTADILTGLRKKLVTLKWKDDKCCTVEISGLDIGWGQRIPLELDEEQGFWILKRE LLEGRYEYKYIVDGEWTINKHELVTTQNKDGHVNNYVQVLDDDTDSANAALQKSLTGDDPNLTGDERLRIRRFLEALPEDEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.008G029300 [exp]	0	1
					Potri.003G135200 [exp]	1.73	0.9692
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	4.89	0.9626
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.001G317600 [exp]	7.54	0.9563
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.015G093600 [exp]	7.74	0.9403
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.004G020500 [exp]	8.66	0.9416
AT5G37360			unknown protein		Potri.019G023700 [exp]	9.00	0.9383
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	9.38	0.9543
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Potri.003G088700 [exp]	9.48	0.9349
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.010G232200 [exp]	11.04	0.9069
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.001G097300 [exp]	12.48	0.9309

Compare expression of checked genes

Potri.008G029300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.