Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04480 1238 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G01210 665 / 0 glycosyl transferase family 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232000 [exp] 1730 / 0 AT5G04480 1229 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G166100 [exp] 720 / 0 AT4G01210 1168 / 0.0 glycosyl transferase family 1 protein (.1) Potri.014G092500 [exp] 720 / 0 AT4G01210 1237 / 0.0 glycosyl transferase family 1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028829 [exp] 1353 / 0 AT5G04480 1216 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10017452 [exp] 1342 / 0 AT5G04480 1202 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10008732 [exp] 732 / 0 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1) Lus10002154 [exp] 730 / 0 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Potri.008G029400.1 pacid=42806218 polypeptide=Potri.008G029400.1.p locus=Potri.008G029400 ID=Potri.008G029400.1.v4.1 annot-version=v4.1 ATGATCCGAAACCACCATTCTCCACCCGAACTACCGGTCTCCGCTATCAATGGAGGTTCCGACGGTGGCTCCGATCAAAGTTCCAACTCGATTCGAGACC GTTCTCTTTTCAAACGAAACCCTAACTACAACACTAACACTCCAGACAAATCAAGTAAATCACCTCTTGATCGGTCTGATCGCCGCAGCCGATGGCACCC CTATACAAACAGAAGCTACAACCGCAAGGGGTGGTTGCTCCCTTGCTTTCCATTTCGCGGCGTTTATTTATTCTACTGTTTGATTTTTTTCGCTGTTTTA GCTTTCGTTTTGGCGTCTATTTTGTTGCAGAGTTCGATTACCGGTATGGCTGTGTTTCGTAGAGGGTGGATTGATCATTGGAGACCGATCAAAGAAGATT TGAAATCAGGTGCTATGTTGAAATTCGTGCCCGTGTTAAAATCACGGTTGCCTTTGGAAGGTCACGGGCTCGATCATGTCAGATTGCTAGCTAATAGAGT TGGCCTCAGGCCTCCAAGACTCGCCGTTATCTTAGGAAACATGAAGAAGGGCCCACAGTCATTGATGTTGATTAGTGTGGTGATGAATCTGCGGAAACTT GGTTATGCACTTAAGATATATGCAGTGGATAATGGTGTGACACGATCAGTGTGGGAGGAAATAGGAGGCCGGATATCAATTTTAGGACCAGAGCAATATG ACCATATTGATTGGTCCATTTTTGAAGCTGTTATTGTCGATTCACTTGAAGCCAAAGGGGCAGTTTCAAGCCTCACACAGGAGCCATTCCAGTCAATACC GCTTGTATGGATAATCCAAGAAGATACCCTTGCGAATCGTCTTCCATTGTATCAGGAAATGGGCTGGCAGCATTTGCTGTCTCATTGGAGAAGTATTTTT AACAGGGCTAATGTTGTTGTATTTCCAGACTTCACTTTGCCGATGTTATATACTGTGCTTGACACTGGAAACTTCTTTGTGATTCCTGGATCACCAGTAG ATGTGTGGGCTGCTGAAAGCTACAGTAAGACCCACGCTAAGCATCAGTTAAGGGTGGACCATGGATTCAGCAAAGATGATTTGGTGGTTCTAGTTGTTGG TAGTTCTTTCTTCTATGATGAGCTATCATGGGATTATGCTGTGGCAGTGCACACCCTAGGACCTCTACTAGCCAAATATGCAAGGACCAAAGATGCTGAA GGATCATTTAAATTAATTTTCTTAGGCGGTAATTCCACTGATGATAATGCTTTACAGGAAGTTGTTTCTGGTCTGGGACTTCATCATGGCTCTGTGTGGC ATTATGGCCTGCATGGTGATGTCAACAGTGTGTTATTAATGGCAGATGTTGTTCTTTATGGTTCTTCCCAAAATGAACAGGGTTTTCCTCCTTTACTTAT CCGAGCCATGACCTTTGGAACCCCTGTCATTGCACCCGATATTCCTATCTTGAAAAAATACGTTGATGATGGAGCCCATGGGATATTGTTCTCAAAATAT AGCCCTGAAGCATTGACAAGGGCTCTCTCTCTTTTGATATCAAATGGAAAACTTTCTAAATTTGCTCAAACTCTTGCTTTCTCTGGAAGACTGCTTGCTA AGAACATGCTTGCATCAGAATGTATAATTGGTTATGCAAGGCTTTTGGAGAATTTGATTAGTTTTCCATCAGATACCTTGTTGCCTGGTCCTGTGTCTAA CCTTCAACGGAGGGAATGGGAATGGAACTTGTTCAGCAAGGAACTAGAACAGGAAATTGATGATTTGTTAAGCATGGCTGAGGGCGATTTTTCTTTCAGA GAAACCAGTGCTGTTTATTCCCTTGAGAAAGAATGGAGCAATCATGTTAATTCAACTAGCATCTCTGGGAATGGAACTGAAATTCTAGTACCAGATATCC CAACAGAATCAGATTGGGATGTTTTGAGTGAAATAGAAAGCTTTGAAGAATATGAGAGGGTGGAAACAGAGGAGCTTCAAGAAAGAATGGATAAGAGTCA TGGTCCGTGGGATGAGATTTATCATGATGCTCGAAAATCTGAAAAGCTAAAGTTTGAAGCAAATGAGAGGGATGAAGGTGAGCTAGAAAGGACTGGCCAG CCAGTATGCATTTATGAAATATATGATGGAGCTGGGGCCTGGCCATTTTTGAATCATGGATCTTTATACCGTGGCTTAAGTCTTTCTACAAAAGCGCGGA GGTCAAGATCTGATGATGTGGATGCAGTTGCCCGGCTTCCCCTCCTGAACGACAGTTACTATCAGAATATATTATGTGATATAGGAGGAATGTTTTCTAT TGCAAACAGGGTGGATGACATTCACAAGAGACCTTGGATTGGGTTTCAATCATGGCATGCTGCTGGTAGTAAGGTTTCATTAACATTTAAAGCTGAACAA GTTCTAGAAGAAAAGGTGCAAGAAGAAAATAAAGATGTAATGTACTACTGGGCTCGCCTAGATATGGATGGTGGAGTTACAGGAAGCAACGATGAACTCA CTTTCTGGTCCATGTGTGACATCTTAAATGGAGGACACTGCAGAATTGCTTTTGAAGATGCCTTCCGCCATATGTATGGCTTGCCATCAAATCTTGAAGT TCTTCCTCCGATGCCAGAAGATGGAGGTCACTGGTCTGCCCTGCATAGCTGGGTCATGCCAACCCCTTCCTTTCTGGAGTTCATTATGTTTTCACGAATG TTTGTTGATTCTCTTGATGCTCTGCAATCCAACTCTAGCCAAATGACCAAGTGTCTGTTGAGTTCCTCGGAGCTACAGGAAAAGCATTGTTATTGTCGAA TATTGGAAGTCCTTGTTAATGTTTGGGCTTATCATAGTGCACGAAGGATGGTTTACATAGATCCACACACTGGTTCTGTAGAAGAACAGCACCCTGTTGA GCAAAGAAAGGGAATAATGTGGGAAAAGTACTTTAAGCTTATGGTGTTGAAGAGCATGGACGAAGATCTTGCTGAGGCTGCAGATGATGGAGATCATCCA AGGGAGAGGTGGCTGTGGCCACTAACAGGAGAAGTGCATTGGCAAGGGATTTATGAAAGGGAGAGGGAAGAAAAATATAGAGTAAAAATGGACAAGAAGC GGAAAACAAAAGAGAAACTATTTGAAAGATTGAAGTCTGGATACAAACAGAAACCACTTAGGAAATATAGGAAGTTGAGATTCTGA
AA sequence Show only first row Show all	>Potri.008G029400.1 pacid=42806218 polypeptide=Potri.008G029400.1.p locus=Potri.008G029400 ID=Potri.008G029400.1.v4.1 annot-version=v4.1 MIRNHHSPPELPVSAINGGSDGGSDQSSNSIRDRSLFKRNPNYNTNTPDKSSKSPLDRSDRRSRWHPYTNRSYNRKGWLLPCFPFRGVYLFYCLIFFAVL AFVLASILLQSSITGMAVFRRGWIDHWRPIKEDLKSGAMLKFVPVLKSRLPLEGHGLDHVRLLANRVGLRPPRLAVILGNMKKGPQSLMLISVVMNLRKL GYALKIYAVDNGVTRSVWEEIGGRISILGPEQYDHIDWSIFEAVIVDSLEAKGAVSSLTQEPFQSIPLVWIIQEDTLANRLPLYQEMGWQHLLSHWRSIF NRANVVVFPDFTLPMLYTVLDTGNFFVIPGSPVDVWAAESYSKTHAKHQLRVDHGFSKDDLVVLVVGSSFFYDELSWDYAVAVHTLGPLLAKYARTKDAE GSFKLIFLGGNSTDDNALQEVVSGLGLHHGSVWHYGLHGDVNSVLLMADVVLYGSSQNEQGFPPLLIRAMTFGTPVIAPDIPILKKYVDDGAHGILFSKY SPEALTRALSLLISNGKLSKFAQTLAFSGRLLAKNMLASECIIGYARLLENLISFPSDTLLPGPVSNLQRREWEWNLFSKELEQEIDDLLSMAEGDFSFR ETSAVYSLEKEWSNHVNSTSISGNGTEILVPDIPTESDWDVLSEIESFEEYERVETEELQERMDKSHGPWDEIYHDARKSEKLKFEANERDEGELERTGQ PVCIYEIYDGAGAWPFLNHGSLYRGLSLSTKARRSRSDDVDAVARLPLLNDSYYQNILCDIGGMFSIANRVDDIHKRPWIGFQSWHAAGSKVSLTFKAEQ VLEEKVQEENKDVMYYWARLDMDGGVTGSNDELTFWSMCDILNGGHCRIAFEDAFRHMYGLPSNLEVLPPMPEDGGHWSALHSWVMPTPSFLEFIMFSRM FVDSLDALQSNSSQMTKCLLSSSELQEKHCYCRILEVLVNVWAYHSARRMVYIDPHTGSVEEQHPVEQRKGIMWEKYFKLMVLKSMDEDLAEAADDGDHP RERWLWPLTGEVHWQGIYEREREEKYRVKMDKKRKTKEKLFERLKSGYKQKPLRKYRKLRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04480			UDP-Glycosyltransferase superf...		Potri.008G029400 [exp]	0	1
					Potri.006G172600 [exp]	1.73	0.7581
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.019G072800 [exp]	3.46	0.6777
AT4G22990			Major Facilitator Superfamily ...		Potri.003G120600 [exp]	15.71	0.6327
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.016G129000 [exp]	18.16	0.5699
AT4G27220			NB-ARC domain-containing disea...		Potri.018G137900 [exp]	20.49	0.6086
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.004G225700 [exp]	21.42	0.6364	ASK4.1
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.016G106650 [exp]	21.77	0.6721
					Potri.018G088701 [exp]	22.71	0.6955
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	23.91	0.6431
AT4G21215			unknown protein		Potri.004G023000 [exp]	25.92	0.6366

Compare expression of checked genes

Potri.008G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.