Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52170 128 / 2e-32 DNA binding (.1.2) AT5G58210 60 / 1e-09 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G231900 [exp] 564 / 0 AT3G52170 138 / 2e-35 DNA binding (.1.2) Potri.018G151900 [exp] 49 / 3e-06 AT5G58210 89 / 4e-20 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017453 [exp] 175 / 5e-49 AT3G52170 133 / 2e-33 DNA binding (.1.2) Lus10028828 [exp] 174 / 5e-47 AT3G52170 131 / 8e-32 DNA binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G029500.1 pacid=42808330 polypeptide=Potri.008G029500.1.p locus=Potri.008G029500 ID=Potri.008G029500.1.v4.1 annot-version=v4.1 ATGCTAAAGGGTGGTGGGTTTTTTCCCATCATGCATGCTGTAAAGGGTGTCTGGGTTGGCCAAACATTTGCTTTAGCCAAGTGCAATGATTCTGGAGGGA AGAAGTCTCGGATTCGGAGGTCGAAGGAGGAGAGGAAGGGAATGGTGGAGTCCTTTATAAAGACGTACCAGAATTTAAACAATGGGAATTTTCCATCTCT TAATCTCACACACAAGGAAGTTGGTGGGTCGTTTTATACTGTACGGGAGATTGTTCGGGAGATAATCCAAGAAAATAGAGTGCTGGGTCCTGGTAACTTG TCACCGGAAGAGCAGCATAATGATCAATTTGTGGAGCAGTACCCATTGGGTACAATTTCCACAGAACCTCAAGCTTCTCTATCCACATCTCCAAATGGAA GTCCTGTACCAGATCAGCATGATGAGGGCTCAAGTGAAGAGCATTTAATTTCTGAGCTTCAGGTTGAACCTGAACAGCAGGGATTCGATAATGGGAGCCA TGTAATTGTTAAGAATGAAGAAGCCGATAAACCAGAAGTTGTAGAGGTTCAAGAAACTGAACCTCTGGAAATAGAGAAAAGAATGGAAGAAGTGGCAGCA TCTGATTCTAAAGTAACTCAAATGGCAGATGTAATGGTAGAGACATTTCCATTGCCGCCTGTTACCAAGCCAGCTGGAAACTTGAATGGAAATTGCAGTA ATTTAAGGGAGATAAATGGGACTTGTGAAGAGAAAAATGTTGAAAAGGTGCTCTTGGAACCAGAACATGACCCAGGAAATGGCATTTCTTTGCCTGACAG AATAACTTCCTTGAATGATAGCAGTTTGGCAGATGATAAAGAAGTGGAAAAGTCAGCAGTTCAATTGTTGGAACAAAGCTCTGATTTGGTGCGTGAACAA GAAGTGGAAAACTTTGCAGATCTGGCAATGGCAAGTTCGCATGCATCTGTCACCAAAGGAAGCATTTTGCAGGATGCTGAGGCTGACATGGATGTGAAGT TGAAGTCACCACATGATGACAAGACAATTGCTGAGACTAAGGTTGCTAGTGCTCAAAATGCCATGCAAACCAAATCTTTGGATAGCAATGACGTCACTGT TAGTATCTGTCCGTCAATAGCCAAAGAAATTGAGATAAAAGATAAAGTTGCAGTTCTACATGGTCGTGCCTCTCAGAAAGGAAGCAGTCCAACACTAAAC AGAATTAATCTTGAATCGTGGGGAGCGGCATCCAAGAATCAAACAGAACCAGAAACTAACCCGCTTTGGGCCATTTTTAAATCGTTCTTGGCTGCCTTTG TGAAATTTTGGTCAGAATAA
AA sequence Show only first row Show all	>Potri.008G029500.1 pacid=42808330 polypeptide=Potri.008G029500.1.p locus=Potri.008G029500 ID=Potri.008G029500.1.v4.1 annot-version=v4.1 MLKGGGFFPIMHAVKGVWVGQTFALAKCNDSGGKKSRIRRSKEERKGMVESFIKTYQNLNNGNFPSLNLTHKEVGGSFYTVREIVREIIQENRVLGPGNL SPEEQHNDQFVEQYPLGTISTEPQASLSTSPNGSPVPDQHDEGSSEEHLISELQVEPEQQGFDNGSHVIVKNEEADKPEVVEVQETEPLEIEKRMEEVAA SDSKVTQMADVMVETFPLPPVTKPAGNLNGNCSNLREINGTCEEKNVEKVLLEPEHDPGNGISLPDRITSLNDSSLADDKEVEKSAVQLLEQSSDLVREQ EVENFADLAMASSHASVTKGSILQDAEADMDVKLKSPHDDKTIAETKVASAQNAMQTKSLDSNDVTVSICPSIAKEIEIKDKVAVLHGRASQKGSSPTLN RINLESWGAASKNQTEPETNPLWAIFKSFLAAFVKFWSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52170			DNA binding (.1.2)		Potri.008G029500 [exp]	0	1
AT3G53440			Homeodomain-like superfamily p...		Potri.006G280800 [exp]	1.73	0.8406
					Potri.009G050900 [exp]	7.48	0.7835
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.012G141000 [exp]	10.53	0.8252
AT4G16060			unknown protein		Potri.010G006000 [exp]	15.23	0.7703
AT3G01790			Ribosomal protein L13 family p...		Potri.017G066000 [exp]	15.87	0.8198
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132500 [exp]	17.66	0.7968
AT5G37360			unknown protein		Potri.013G050300 [exp]	18.33	0.7971
AT3G17668		ENA	ENHANCER OF ATNSI ACTIVITY, Dn...		Potri.014G179800 [exp]	20.34	0.8383
AT4G34760			SAUR-like auxin-responsive pro...		Potri.007G012800 [exp]	20.59	0.7305	SAUR28
AT1G48570			zinc finger (Ran-binding) fami...		Potri.015G038200 [exp]	32.55	0.8076

Compare expression of checked genes

Potri.008G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.