Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02420 47 / 7e-08 unknown protein AT3G20898 42 / 1e-05 unknown protein AT3G20900 40 / 2e-05 unknown protein AT3G10525 39 / 0.0001 LGO, SMR1 SIAMESE RELATED 1, LOSS OF GIANT CELLS FROM ORGANS (.1) AT5G40460 39 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G231600 [exp] 185 / 5e-62 AT5G02420 44 / 1e-06 unknown protein Potri.010G231700 [exp] 94 / 5e-26 AT5G04470 / SIAMESE, cyclin-dependent protein kinase inhibitors (.1) Potri.009G003400 [exp] 77 / 2e-19 AT5G02420 45 / 7e-07 unknown protein Potri.001G212300 [exp] 73 / 2e-17 AT5G02420 43 / 8e-06 unknown protein Potri.006G053600 [exp] 49 / 2e-08 AT3G20898 67 / 1e-15 unknown protein Potri.016G053900 [exp] 44 / 2e-06 AT3G20898 68 / 5e-16 unknown protein Potri.010G045200 [exp] 42 / 6e-06 AT1G10690 92 / 2e-25 unknown protein Potri.014G090000 [exp] 41 / 2e-05 ND / Potri.001G239000 [exp] 41 / 3e-05 AT5G02420 59 / 1e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037925 [exp] 102 / 5e-29 AT5G02420 47 / 2e-07 unknown protein Lus10038653 [exp] 99 / 1e-27 AT5G02420 47 / 2e-07 unknown protein Lus10017454 [exp] 61 / 6e-13 ND 38 / 3e-04 Lus10016559 [exp] 45 / 1e-06 AT2G37610 39 / 2e-04 unknown protein Lus10040827 [exp] 45 / 3e-06 AT3G20898 44 / 8e-06 unknown protein Lus10004622 [exp] 36 / 0.001 AT1G60783 51 / 9e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G029600.1 pacid=42806846 polypeptide=Potri.008G029600.1.p locus=Potri.008G029600 ID=Potri.008G029600.1.v4.1 annot-version=v4.1 ATGTCTACCGATCTTGAATCACGCCAGGATTTGCCAAGAATTCAAGTTCGTGCCGTCAAGACTGAAACCCTACAATCCTGCAGTGCTACGGATGACAAAG AAACCATAATTAAGCAAGAAAACAGCGAAACTGACGACTGTCAAACGCCGAAATCTGAAGAGCACAAGATTCCTGCCGTTTTAAGCTGTCCACCGGCCCC GAGAAAACCAAGAAGGTCCTTTTCATGCAAGAGAAAACTGACGGAACTCGAGTTCTTTGAGATTGTGAACCGCGAAGAAGTAGATTCGTTTTTTCAATCA AGTTTTGAGCTTCTTCCGAAGAGAAGGTGCCCTTGCATATGA
AA sequence Show only first row Show all	>Potri.008G029600.1 pacid=42806846 polypeptide=Potri.008G029600.1.p locus=Potri.008G029600 ID=Potri.008G029600.1.v4.1 annot-version=v4.1 MSTDLESRQDLPRIQVRAVKTETLQSCSATDDKETIIKQENSETDDCQTPKSEEHKIPAVLSCPPAPRKPRRSFSCKRKLTELEFFEIVNREEVDSFFQS SFELLPKRRCPCI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02420			unknown protein		Potri.008G029600 [exp]	0	1
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.001G371700 [exp]	4.89	0.8203	CBL2.2
AT4G10150			RING/U-box superfamily protein...		Potri.014G076800 [exp]	5.91	0.8846
					Potri.017G061800 [exp]	9.05	0.7988
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.015G101200 [exp]	11.66	0.8506
AT2G20740			Tetraspanin family protein (.1...		Potri.019G101800 [exp]	12.72	0.8487
AT1G48300			unknown protein		Potri.010G003200 [exp]	13.85	0.8281
AT3G05327			Cyclin family protein (.1)		Potri.005G033600 [exp]	14.49	0.8717
AT2G46550			unknown protein		Potri.005G071400 [exp]	14.49	0.8579
AT3G15140			Polynucleotidyl transferase, r...		Potri.003G194300 [exp]	15.09	0.7475
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.003G158500 [exp]	17.66	0.8339

Compare expression of checked genes

Potri.008G029600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.