Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22060 122 / 2e-27 unknown protein AT5G52280 80 / 1e-14 Myosin heavy chain-related protein (.1) AT5G41140 74 / 5e-13 Myosin heavy chain-related protein (.1.2) AT1G63300 71 / 6e-12 Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120400 [exp] 495 / 5e-150 AT1G22060 121 / 2e-27 unknown protein Potri.002G091700 [exp] 120 / 6e-27 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 120 / 9e-27 AT1G22060 1031 / 0.0 unknown protein Potri.012G141200 [exp] 89 / 2e-17 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 85 / 3e-16 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 84 / 6e-16 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 49 / 5e-05 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.010G231432 [exp] 0 / 1 ND / Potri.010G231366 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037927 [exp] 578 / 0 AT1G22060 99 / 2e-20 unknown protein Lus10017237 [exp] 197 / 1e-50 AT1G63300 112 / 8e-25 Myosin heavy chain-related protein (.1) Lus10016240 [exp] 186 / 8e-47 AT5G52280 122 / 8e-28 Myosin heavy chain-related protein (.1) Lus10029303 [exp] 181 / 2e-45 AT5G52280 126 / 6e-29 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 122 / 2e-27 AT1G22060 985 / 0.0 unknown protein Lus10033461 [exp] 115 / 3e-25 AT1G22060 978 / 0.0 unknown protein Lus10024517 [exp] 93 / 2e-18 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 88 / 6e-17 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 81 / 6e-15 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10039218 [exp] 76 / 3e-13 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G029800.3 pacid=42805931 polypeptide=Potri.008G029800.3.p locus=Potri.008G029800 ID=Potri.008G029800.3.v4.1 annot-version=v4.1 ATGTTCAGGCTACACAAACACAAGTCAGATAAATTTGGAGGCACACTTGACTTCAAGTTCTCCAGCTTCCAGGCTCTTCAGGTACCAAAAGGATGGGACA GGCTTTTTGTGTACATAATTTCAGTAGAAACTGGAAAGACGCTGTCCAAATCTGGGAAAGGGTCGGTGAGGAACGGAACTTGTCGATGGACGGAGAGTTT GACGGAGTCCATTCCGGTTTCGGAGAAAGAGATTGATGATTGTCTCTTCAAGTTTGTTGTTTCCATGGGATCGTCGAGATCGGGCATCCTTGGAGAGGCT ACGGTTAATCTGGGGAGTTATAGGAATGCAGAAACTGCTGTTCCTGTTTCGTTGCCGTTGAAAAAGTGTAACCATGGAACCATTTTACTAGTTAGAATTC AGTGCCTGACACCAAGAGCAAAACCCAGGGAGGAGCAGTTTGAAGAGCCTGGTTCATATGCAGAGGATGTGATTGCTGTTGACTACATTGACATGGAAAA CAAATCTGATGTTTCTGATAGCTCAGTCGCCAGGAGTGTTGGATCCTCATCAAGTAACCATTTGGATAGTGCATCTGGTACAGGAGAACATAGTAGGGAA TTGAGTTTCTCAGCATCAGGATCACGCTATAGCTTTGACTCAATGGAGGGTTCATTGGATTATTCCCTGCAAAATAACTTAATTGGCACCAGCAATCTTG TTGGGAGACAAGATTCAACTGGCTCCCAGAACAGTTCTTCTTACGGATCTTATTCTCTTAATGATTCTTCCAGATCAAATCACTCGTCCTTTAATTCAGC TTCACGAAGCCATCTTCAGAATCAAAGAGAAAGTCTTAATCAGGTTTCAAGAACTGTTGCCTCATCACCATTACGGAATGCTGATTCATCTAAAGATCTT CTGGAAGCTGCAGAAGCTACAATTGAGGAGCTTCGAGCAGAAGCGAGGATGTGGGAACAAAATGCTCGTAGATTAATGTTTGATCTGGAAAAAATGCGGA AGGATTTATCAGACCAATCAATGCACTGTGCAAGTCTTGAAATGCAGCTTTCAGAATCGCACAGAGAATGTGATGGCTCGAAGCAGAAGATTGAACAATT GAAGATCCTGTTGGAGGAATCCGTAGCAAAGCAAACAACCACTGAGAAGTTGAAGTTTCAGGCCAAAGAAATGGATAATTTTCAGAAAGAAATAGAAGAT GAATTAAAGTTTCAGAAAGAAACGAATGCTGACTTGGCTTTACAGCTAAAGAAAACCCAAGAGTCGAACATTGAGCTTGTTACCATACTTCAGGAACTGG AAGATACCATAGAAATACAGAAAATAGAAATTTCCGATCTGTCAAAAATTCAATCCAAAAGTCAAAAAGCAGGAAAGTATCACCTTGAAGTCCAAAACAG TGAGGAGACCAAACGAATGAAGAAATCTTTTGCTAAGGATACAAGAGAGGCCTCTTGTGATTCGGGTATGGAAGGCAGTACTGTTGAGCAGGAATTGGAT GATTTACCTGTAGGTTCTGAATCAGAGGACAGCAGGAGCCTGGAGCTGGAGTTTCAGCAACTGCAAGATTCACAAAAGAATTTAGAAAGTACTATCAAGC CTCCGGAGAGATCTCTTGAGAACAAAATCCATGCAATTGAGGTTGAGCAAAGTTTAAAAACTCAAACTCTAATGGATTGCGAAGCAGAATGGAGAGAAAA ACTAGCTGCCAAGGATGAAAAGATCACCAATTTGGAAGCAGAGTTATTCAAAGCTCTTAATCCTCTTCAATTTCAAAATGGAGATGATCGCGAACTGATT AAAGAAATTGAAGTTCTGACACAGAAGATGGAGGAACTTGAGAGAGATTGCAGTGAGCTTACAGAAGAAAATCTAGAACTTGTACTTAAGCTCAAAGAGT CAGAAAAGTATGGTGCCTCTACTAGCCCTTCATCAAATGAATGTTTGGGGAATCATTCTCTCTTAACCTCTGAATCTGAGGTTAGAAAATTGAGATCCCA AATATGCAAGCTTGAAGAAGAGATGCGTAAGAAGGAAATAATTAGCCAACAACTTTCCACTGAAATGGCTAAAACATTATCTGAGTTGCAGGAGCACATC CAATCATGTTTAGCCAATGTGAAGAAGCAACAATGTGATCCATGTTTTCCGATAAATGGAGAATGTAGTACTGCTTTTGATAAACCTGTCATTTCAAATG ATACAGATTTGTTTAATCAAAAAGAGAGAGCAAAGTCTATTCTGAACAGTTTTGTCCAGCTAAAAGATTTGTTTGAAGCAAAATCTGCTTTGTTCAAAAA TGAAGTTCACCAAAGCAAAGAGGTAAGAGCAAAAGTGGTGAATCCTGATGAGCTCCGGAACAATTTGGAGGCTTATGACTCAGGGGGAAATACTTTCAGC ACTTGTGGTCCACAACCAGAAAGCATGCAAATGGAATCTACACCTGAGATGACAGATTTAGAAAAGGAGCTTTTGGAAAAGATATCTGGCATGGATAAGC TTAATTCTTTGAATGAACAAGAGATAGATGCTCTAAGGCATTCCCAAACGGAGCTAGAAACACAGATTTCTAATCTTCAGAACGAGAGATGGCAGTTGGA GCAAAATCTTGAAGTTACGCTAAGAGAAAGCATGGTGACCTCTAAATGCTTGGATGATTTACGAAAGGAAATGACGAAGCTTAGTAGTAACAGGGATTCA CAAGCTTCAGCCAAGGAGATCCTAGAAAGGAAGTTGTCAGAGCTGGAAAGTGGCAAATTGGAGATGGAAGTTCACTTGTCTGAACTAGAAAAAGAAAATG TACAGTTATCAGAGCGAATATGTGGCTTGGAAGCACAATTAAGATATTTGACCAACGATAGGGAATCAACCAGCGAGGAATTGCATAACTCGGAATCTAG TAATATGAGTCTCCGGGAAGAGATAAGAAGACTGGAAAGTGAATTGGAGGCACAAAAGGTTGATGCGAGGCAAAAGATGCAGGACATGCAAAAGCGTTGG TTAGAAGCTCAAGAAGAGTGCGGGTATCTGAAAGTAGCAAATCCAAAGTTACAAACTACAGCTGAAAGTCTTATTGAAGAATGCAGTGTGCTTCAGAAAT CAAATGCAGAACTGAGGACGCAAAAGATGCAGTTACATGAGCATTGTACAATTCTGGAAGCTGAGTTAAGGGATTCAGAAAAGTGTTTTTCTAATATGTC GAAGGAAGTAGAAGCTCTTGAAGGAAAGTATATATTGCTGCAGCAAGAAATTGCCTCAAAAGAGCAAGCACTTGGTATAGAACTAGATTCACTTCTTCAA GAAAACAAGAAATATAAAGAGAAACTTGCTATGGAGGAGAATTTTCTGAACCAGATGCACTTGGAGAAGACAGTTGAAGTTGAGAATCTTCAAAGAGAGG TTGCACATCTGACTGAACAGATATCTGCAACTCATGGAGAAAAGGAAAGGACAGCTTCAGAAGCTGTGATTGAAGTGTCTCATCTGCGTTCAGGTAGAGC TATGCTGGAAGCTTCTCTGCAAGAATTACAAGGAAAACTCGAATTATCTGAGAGTAACCTCTGTACCCTCCAGATGGAATCAGAGATTAAAGTGCTTGGA CTTATGCAAGAACTTGCTGCTTCCAAACAAAATCAGGAAGTTCTGATGGCTGATCATGAAAAGCTGCTTGAATTGTTAGAAGATGTCAAATCCAATGAAG AGAAACATAAAAGCAGTGTTAAGGGGCTGGAAATAAAACTTAAAGCTTCTGAATATGCGAGGCAACAAGTTGCAGAGGAAACTTCCAGCCTTCAGATCCA ATTGCAGAAAACATCACTTCTTCAAGACGAGATTCTGGATCTTAAAAGATCGCTTAATGAGGTCAAATTTGAGAATCAAAAGCTTGAAGCTTCATTGCAG ATGTTATCAGGGGATTACGAGGAACTGAAGACCGAGAAAATCCTGTCTATGCAGAAGATTTCTGACATGCAGAGGGCTGTGTCTGAATTAGAAGACTGCA AAAGGAGTAAAGTTGCCCTGGAGGAGAAGCTTTTGCGACTGGATGGGGATTTAACCGCAAGAGAAGCAATAGGTGCTCAGGATGCTGAGCTGAAAAATGA GCTTGCTCGGGCTAAGAGAGCAAATAGTGAATTCCAGAGGAAGATAAGATACCTCGAAGAGGAGAAGCAGGAGTGCCTGAAGAAAGCTCAAGCTCTTGGA GAGGAACTTGAACAGAGGAAAGCATCAAAACAGGATCAACATAGTTTCAGTGATGCAAGCCTCCCTTCTGGTCCTGAATCCAGTGACATGAATTCTTCTA CTCCTGATGAATTCAGTGTCTCACAGGTCGGTACGAAATCGAATTTTAATACTGGAAATGCTCCAGGTATAGGATTGGATTCTTTGTCAAAGATCCAACT ACTCGAGAATGAACTAGCTGAGGCTTTGGAGGCAAATGATATGTACAAAGCCCAGCTTAAGAGCTTGTTAACCGAGGAGTACAAGGATCCATTAAATGCT CCCAAGAAGTTGTTGGATGAAGATGTAGTAGTCGAAGGAGATGGATATGAGGGTAAGATATCATCACTTCAGACAGAGCTAAAAGATTTGCAGGAGCGCT ACTTCGACATGAGCCTCAAATATGCAGAAGTTGAAGCTGAACGTGCGAAACTTGTACTAAAGCTGAAGCCTGTCAATAATGGACGAAGGTGGTTTTCATG A
AA sequence Show only first row Show all	>Potri.008G029800.3 pacid=42805931 polypeptide=Potri.008G029800.3.p locus=Potri.008G029800 ID=Potri.008G029800.3.v4.1 annot-version=v4.1 MFRLHKHKSDKFGGTLDFKFSSFQALQVPKGWDRLFVYIISVETGKTLSKSGKGSVRNGTCRWTESLTESIPVSEKEIDDCLFKFVVSMGSSRSGILGEA TVNLGSYRNAETAVPVSLPLKKCNHGTILLVRIQCLTPRAKPREEQFEEPGSYAEDVIAVDYIDMENKSDVSDSSVARSVGSSSSNHLDSASGTGEHSRE LSFSASGSRYSFDSMEGSLDYSLQNNLIGTSNLVGRQDSTGSQNSSSYGSYSLNDSSRSNHSSFNSASRSHLQNQRESLNQVSRTVASSPLRNADSSKDL LEAAEATIEELRAEARMWEQNARRLMFDLEKMRKDLSDQSMHCASLEMQLSESHRECDGSKQKIEQLKILLEESVAKQTTTEKLKFQAKEMDNFQKEIED ELKFQKETNADLALQLKKTQESNIELVTILQELEDTIEIQKIEISDLSKIQSKSQKAGKYHLEVQNSEETKRMKKSFAKDTREASCDSGMEGSTVEQELD DLPVGSESEDSRSLELEFQQLQDSQKNLESTIKPPERSLENKIHAIEVEQSLKTQTLMDCEAEWREKLAAKDEKITNLEAELFKALNPLQFQNGDDRELI KEIEVLTQKMEELERDCSELTEENLELVLKLKESEKYGASTSPSSNECLGNHSLLTSESEVRKLRSQICKLEEEMRKKEIISQQLSTEMAKTLSELQEHI QSCLANVKKQQCDPCFPINGECSTAFDKPVISNDTDLFNQKERAKSILNSFVQLKDLFEAKSALFKNEVHQSKEVRAKVVNPDELRNNLEAYDSGGNTFS TCGPQPESMQMESTPEMTDLEKELLEKISGMDKLNSLNEQEIDALRHSQTELETQISNLQNERWQLEQNLEVTLRESMVTSKCLDDLRKEMTKLSSNRDS QASAKEILERKLSELESGKLEMEVHLSELEKENVQLSERICGLEAQLRYLTNDRESTSEELHNSESSNMSLREEIRRLESELEAQKVDARQKMQDMQKRW LEAQEECGYLKVANPKLQTTAESLIEECSVLQKSNAELRTQKMQLHEHCTILEAELRDSEKCFSNMSKEVEALEGKYILLQQEIASKEQALGIELDSLLQ ENKKYKEKLAMEENFLNQMHLEKTVEVENLQREVAHLTEQISATHGEKERTASEAVIEVSHLRSGRAMLEASLQELQGKLELSESNLCTLQMESEIKVLG LMQELAASKQNQEVLMADHEKLLELLEDVKSNEEKHKSSVKGLEIKLKASEYARQQVAEETSSLQIQLQKTSLLQDEILDLKRSLNEVKFENQKLEASLQ MLSGDYEELKTEKILSMQKISDMQRAVSELEDCKRSKVALEEKLLRLDGDLTAREAIGAQDAELKNELARAKRANSEFQRKIRYLEEEKQECLKKAQALG EELEQRKASKQDQHSFSDASLPSGPESSDMNSSTPDEFSVSQVGTKSNFNTGNAPGIGLDSLSKIQLLENELAEALEANDMYKAQLKSLLTEEYKDPLNA PKKLLDEDVVVEGDGYEGKISSLQTELKDLQERYFDMSLKYAEVEAERAKLVLKLKPVNNGRRWFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22060			unknown protein		Potri.008G029800 [exp]	0	1
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	3.00	0.9301
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	3.16	0.9407
AT5G62580			ARM repeat superfamily protein...		Potri.015G069200 [exp]	4.00	0.9301
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	6.48	0.9048
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	6.92	0.9302
AT1G22060			unknown protein		Potri.006G120400 [exp]	7.07	0.9292
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	8.94	0.9016
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	9.48	0.9176
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.006G211300 [exp]	9.48	0.8906
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	10.58	0.9160

Compare expression of checked genes

Potri.008G029800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.