Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04460 805 / 0 RING/U-box superfamily protein (.1.2.3) AT2G27950 249 / 1e-70 Ring/U-Box superfamily protein (.1) AT1G30860 92 / 6e-19 RING/U-box superfamily protein (.1) AT2G34920 89 / 7e-18 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT4G20160 61 / 3e-09 unknown protein AT1G59560 54 / 2e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT2G38195 54 / 2e-07 RING/U-box superfamily protein (.1.2) AT2G38220 54 / 3e-07 RING/U-box superfamily protein (.1) AT5G19080 53 / 5e-07 RING/U-box superfamily protein (.1) AT3G06140 52 / 8e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G231100 [exp] 1286 / 0 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.004G217700 [exp] 319 / 9e-96 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.009G003500 [exp] 304 / 3e-90 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.003G156400 [exp] 120 / 9e-28 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 117 / 1e-26 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 54 / 2e-07 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 53 / 6e-07 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 53 / 6e-07 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 53 / 6e-07 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038656 [exp] 999 / 0 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 993 / 0 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 894 / 0 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10017455 [exp] 882 / 0 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 368 / 6e-115 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 145 / 1e-36 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10004419 [exp] 57 / 3e-08 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 55 / 2e-07 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10003551 [exp] 52 / 7e-07 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10027994 [exp] 51 / 2e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.008G030100.3 pacid=42808865 polypeptide=Potri.008G030100.3.p locus=Potri.008G030100 ID=Potri.008G030100.3.v4.1 annot-version=v4.1 ATGACGGATTTTCAACCATTGCAACAAAAGCCTGAATCAACGGATGATGCCCGGATGGAATTTGAGAGGGGGTTGGAGGAATTGATGCGTGGGCATTTGG ATGATTGTATGCCATTTGCTTCGTGTAGTTCTAATAGGAACGTGGATGAGGAGGATGATGAAGGGGATCAGCTTGTGCGAAGGAGACGTAGGTCTGAACT TGAGGGTGATGATTTGGCTGAGTCATCAGCTGTGAGGCGGCGCCACTCTCGTATTTTGAGTAGGTGGGCTGCTCGCCAGGCGCAGGAGATGATGACGCCT ATGGAGAGGAGGAGTCGTGAGTCAGAGTTGATGGCACTTGCAGGTTTGCACACGGTTTCCATGCTTGATTCCTCATTTTTGAGGGAGTCACAGTCGCCTA CTGCAAGAAGGCAGGGGGCAGTGGAAAGGCCGAGTACTCAGGCGTCTGCAATTTTGCAAATGTGGCGGGAGTTGGAGGATGAGCATTTGTTGAATAGAAG GGAGAGATTGAGGCAGCGAAGGAATGCCGAGTCTAATACAAACATGTCGGTTTCAAATGCATCAGAGAGTCGGGGGAGTGAGAATCAGGGAAGTTTGGAG GATGCAAGTGAGAGTGAAAATGACTTTGGACCTTGGTCACATGACCATATGGTGTCACAGAATGAGCGTGGGGATAATGAGTCTAGCAGGGAGCAATCTC CGGATATTGGAGAAGTTGAGAGGAGCGTGAGGCAGATTGCTCGGGGATGGATGGAGAGTGGCATTAGTGACCGTGCTTCTAATGTATCCCAAAGGAATGG TAGTCCCAGAGCAGAATGGCTTGGTGAAACAGAGAGGGAAAGAGTTAGAATTGTCAGGGAGTGGGTGCAGATGGCAAGTCAGCAGCGAGGAGCTCGTGCT AGCCGGAGGGAAGATCAAGCTGCTGGACACAATGCACAAGTTGACCAAGCTCGTGATGGGTCAGTTGCTGACCATGATGAAGGGCAACCGGAACATATTC ATAGGGACATGCTGAGGTTGCGTGGAAGACAAGCGATTCTTGACTTGCTTGTCAGGATTGAGAGAGAAAGACAGAGAGAACTTGAGGGACTATTGGAGCA TCGGGCTGTCTCGGATTTCGCTCACCGCAATCGCATTCAGTCATTACTAAGAGGTAGATTCTTGCGAAATGAAAGACCGGTTGAGGAGGAGAGACCGCCT TCTATGGCTGCTAGTGAACTAGTCCAATTAAGGCAGCGGCACACTGTTTCTGGCTTAAGGGAAGGGTTTAGGTCCAGGTTGGAAAATATTGTTCGTGGTC AAGTAAGCAGCCATTCTGATACCACACCTAATACTAACATCAATGATTCTGGAAATGATCGGACTCAAACAAACACTCATCAGGACATCCAACATGAGGA GAATGATCAACCACAGCCTAGGAGTCAAGAAAGTGACGTGCGTCGTTTGCCTGATCAAACAAACAGCTCGGGGGGCAACAATGCTACTGATAACATGAAC CGGCAAGAAACTGCTAATCAAGGAGAAGGTTGGCAGGAGCAAGTAACCAATGACGAGAGAGGAAACTGGCAACAGTCTGGCTACAGTCAGTTGGATGAAT GGAGAGGTAGTAATGCGGAACCTATGGATGGAAATTGGCAAGAGAACTCAGTGAATGAATGGTCACGGGAAACACCTGGAAATGTGCCTGGTGAACAAGG TCGACCACAAGGAGCCCAGGAACTTTGGCGTGAGGATGGCTCTAGTGAAACTGTTGAAAATTGGACAGTGGGGTCTTCTGATCCTCCAAGAACTCGCCGT GCTGTTCCAATGAGAAGATTCAATAGATTTCACCCTCCTGATGATGAGAATGTGTATAGTATGGAGCTTAGGGAACTATTGAGCAGGAGAAGTGTTTCTA ATCTTCTTCGTAGCGGTTTCCGTGAAAGCCTCGACCAATTAATACAGTCATACGTGGAGAGGCAAGGTCGCTCTCCCATTGACTGGGATTTGCACAGAAA CTTGCCAACACCAACTCCCACATCACCAGAACGGGATGAGGAGCAGCAAAGAGATGAACAAAATGAGGGTCAACGCGATGCTGTAAACAGACCTTCACTC GTCTTGCCATCTCCACCTGTGCCTCCACCTCAGCCACTGTGGCACCAGGATTTGCATCACACTAGCTGGTCTCGTCATAGCATGCATCGATCAGAACTAG AGTGGGAGACAATTAATGATTTAAGAGCAGACATGGGAAGACTTCAGCAAGGAATGAGCCACATGCAGAGGATGTTGGAAGCCTGCATGGACATGCAGCT TGAGTTGCAACGCTCGGTCAGACAGGAAGTCTCTGCTGCTCTGAATAGATCAGCTGGTGAAAAAGGGTTGGGTGCAGAGACATCTGAGGATGGGTCTAAA TGGGGTCATGTAAGGAAAGGGACATGTTGTGTTTGCTGTGACAGCCATATTGATTCTCTATTGTACAGATGCGGGCACATGTGCACTTGTTCAAAATGTG CAAATGAGTTGGTCCGTGGCGGAGGAAAGTGCCCATTGTGCAGAGCACCAATTGTCGAAGTGATCCGAGCATACTCGATACTGTAA
AA sequence Show only first row Show all	>Potri.008G030100.3 pacid=42808865 polypeptide=Potri.008G030100.3.p locus=Potri.008G030100 ID=Potri.008G030100.3.v4.1 annot-version=v4.1 MTDFQPLQQKPESTDDARMEFERGLEELMRGHLDDCMPFASCSSNRNVDEEDDEGDQLVRRRRRSELEGDDLAESSAVRRRHSRILSRWAARQAQEMMTP MERRSRESELMALAGLHTVSMLDSSFLRESQSPTARRQGAVERPSTQASAILQMWRELEDEHLLNRRERLRQRRNAESNTNMSVSNASESRGSENQGSLE DASESENDFGPWSHDHMVSQNERGDNESSREQSPDIGEVERSVRQIARGWMESGISDRASNVSQRNGSPRAEWLGETERERVRIVREWVQMASQQRGARA SRREDQAAGHNAQVDQARDGSVADHDEGQPEHIHRDMLRLRGRQAILDLLVRIERERQRELEGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPVEEERPP SMAASELVQLRQRHTVSGLREGFRSRLENIVRGQVSSHSDTTPNTNINDSGNDRTQTNTHQDIQHEENDQPQPRSQESDVRRLPDQTNSSGGNNATDNMN RQETANQGEGWQEQVTNDERGNWQQSGYSQLDEWRGSNAEPMDGNWQENSVNEWSRETPGNVPGEQGRPQGAQELWREDGSSETVENWTVGSSDPPRTRR AVPMRRFNRFHPPDDENVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRSPIDWDLHRNLPTPTPTSPERDEEQQRDEQNEGQRDAVNRPSL VLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSELEWETINDLRADMGRLQQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEKGLGAETSEDGSK WGHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04460			RING/U-box superfamily protein...		Potri.008G030100 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	3.87	0.8331
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	4.00	0.8021
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Potri.013G021300 [exp]	4.24	0.7940
AT2G25760			Protein kinase family protein ...		Potri.003G049700 [exp]	4.58	0.7894
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	7.48	0.7851	Pt-UBP27.1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	7.74	0.7831	XRN4.2
AT1G09195			unknown protein		Potri.005G020100 [exp]	17.74	0.7493
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Potri.005G122500 [exp]	19.28	0.7282
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.003G062700 [exp]	22.24	0.7392
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	24.89	0.7982

Compare expression of checked genes

Potri.008G030100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.