Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04420 655 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT3G05420 443 / 2e-149 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 436 / 7e-147 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 204 / 9e-58 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G18610 133 / 2e-33 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 113 / 2e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 87 / 4e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G07720 79 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G04670 80 / 2e-15 Met-10+ like family protein / kelch repeat-containing protein (.1) AT2G18915 78 / 4e-15 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230300 [exp] 887 / 0 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.013G018800 [exp] 437 / 5e-147 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 435 / 3e-146 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G030901 [exp] 209 / 1e-65 AT5G04420 120 / 1e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G214900 [exp] 223 / 7e-65 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 219 / 2e-63 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 134 / 3e-33 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 130 / 6e-32 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 123 / 7e-30 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037933 [exp] 723 / 0 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 711 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 668 / 0 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 665 / 0 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029902 [exp] 457 / 1e-154 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 438 / 4e-147 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 419 / 8e-140 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 418 / 9e-140 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 201 / 1e-56 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 185 / 1e-50 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.008G031200.4 pacid=42806287 polypeptide=Potri.008G031200.4.p locus=Potri.008G031200 ID=Potri.008G031200.4.v4.1 annot-version=v4.1 ATGGGAACAGAGGAGATTGAGAAGGAAATGAACGCGGCCAATTGGTTTTCGCAATTAGCTTATGACCGGTGGGTACCAATCCCTGTCTCCGGCGCAAGAC CATCAGCTCGCTACAAGCATGCTGCAGCAGTTGCTGATGATGATGGGAAATTATATATAGCTGGCGGGAGTCGTACCGGGCGGTATTTGCCTGATGTCCA GGTTTTTGATTTTAGAGGTTTGATGTGGTCTAGTTTAAAGTTCAAAAGTAAAGTAGATGGTGGAAAAGGTGAAGAGAATGGTGCACCGGAAGTTCTTCCA GCTACTTCAGATCATAGTATGGTTAAGTGGGGAAACAAACTTCTTCTCCTTGGTGGGCATTCGAAGGCGAATTCTGATAGCATGATAGTGAGGTTCCTTG ATCTAGAAACACATGCTTGTGGTGTTATCGAGACTTCAGGAGAAGCTCCGGTGTCCCGAGGGGGGCATTCGGTTACACTAGTTGGTTCTAGACTGATAAT TTTTGGTGGAGAGGATAGGAACAGGAAATTGCTGAATAATGTTTATGCCCTTGACTTGGAAACAATGACTTGGGATGTGGTAGTGACAAAGCAGACACCT CCAGCTCCCAGATTTGATCACACAGCTGCAATAAATGGGGACCGCTATCTTCTAATCTTTGGTGGCTGTTCTCATTCAATCTTCTTCAATGATCTCCATG TACTCGACTTGCAGACTATGGAGTGGTCCCAGCCCGAAGTTCAAGGTGATTTGGTGACTCCTAGGGCTGGTCATTCTGGTGTAACCATTGGTGAGAACTG GTATATTGTTGGTGGTGGAGATAACAAAAATGGTTGCCCAGAGACCCTTGTGTTAAATATGTCTAAGCTTGCTTGGTCAGCATTGGCTAGTGTAAAGGAA AGAGATCCACTTGCTAGCGAGGGACTTAGTGTTTGCTCAGTATTAATTAATGGAGAGAGGCATTTGGTTGCCTTTGGTGGCTATAATGGGAAATACAACA ATGAGGTTTTTGTTATGAGACTTAAACCAAGAGATGCATTGCGTCCAAAGATTTTTCAGTCACCAGCAGCAGCTGCAGCTGCAGCTTCTGTTACTGCTGC ATATGCCTTGGCCAAATCCGAGAAGTTAGATTTCTCCAAATTAAATCTGAACTCTAATGGAACTGGAAAGAATTCTACTGAACAAGATTTAGCATTTGAA ATTGATGCACTGAAAGAAGAGAAAAAGGTGCTGGAATTGTCCCTCGCAGAAGTCAGAGCAGAAAATTATAGGGTTACAGAAAAGATTGATGAAGTTAATG GTACTCATGCAGAACTCTCCAAGGAACTCCATTCTGTCCAAGGTCAACTAGTTGCTGAGAGATCAAGATGCTTTAAACTTGAGGCACAAATTGCCGAGTT ACAGAAGATGATGGAATCATTGCAGTCCATAGAGAATGAAGTACAACTACTTAGAAGACAGAAGTCTGCACTGGATCAGGAGATAGAGCGTAGTGCAGCT CAAAGACAAGGTTCTGGTGGTGTCTGGCGATGGATAGCTGGCTAA
AA sequence Show only first row Show all	>Potri.008G031200.4 pacid=42806287 polypeptide=Potri.008G031200.4.p locus=Potri.008G031200 ID=Potri.008G031200.4.v4.1 annot-version=v4.1 MGTEEIEKEMNAANWFSQLAYDRWVPIPVSGARPSARYKHAAAVADDDGKLYIAGGSRTGRYLPDVQVFDFRGLMWSSLKFKSKVDGGKGEENGAPEVLP ATSDHSMVKWGNKLLLLGGHSKANSDSMIVRFLDLETHACGVIETSGEAPVSRGGHSVTLVGSRLIIFGGEDRNRKLLNNVYALDLETMTWDVVVTKQTP PAPRFDHTAAINGDRYLLIFGGCSHSIFFNDLHVLDLQTMEWSQPEVQGDLVTPRAGHSGVTIGENWYIVGGGDNKNGCPETLVLNMSKLAWSALASVKE RDPLASEGLSVCSVLINGERHLVAFGGYNGKYNNEVFVMRLKPRDALRPKIFQSPAAAAAAASVTAAYALAKSEKLDFSKLNLNSNGTGKNSTEQDLAFE IDALKEEKKVLELSLAEVRAENYRVTEKIDEVNGTHAELSKELHSVQGQLVAERSRCFKLEAQIAELQKMMESLQSIENEVQLLRRQKSALDQEIERSAA QRQGSGGVWRWIAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G031200 [exp]	0	1
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	4.47	0.8885	Pt-VPS33.2
AT3G04490			unknown protein		Potri.019G019100 [exp]	4.58	0.8665
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	5.91	0.8449	VLN1.1
AT1G71820		SEC6	SEC6 (.1.2)		Potri.019G088100 [exp]	9.89	0.8373
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	10.95	0.8396
AT2G27900			unknown protein		Potri.001G212600 [exp]	13.26	0.8712
AT5G58510			unknown protein		Potri.009G076000 [exp]	14.96	0.8195
AT1G20540			Transducin/WD40 repeat-like su...		Potri.002G011200 [exp]	16.61	0.8640
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	19.07	0.8234
AT3G48860			unknown protein		Potri.015G104600 [exp]	23.91	0.8104

Compare expression of checked genes

Potri.008G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.