Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 466 / 2e-159 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G05160 462 / 8e-158 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 458 / 6e-156 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 454 / 1e-154 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 450 / 7e-153 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 434 / 1e-146 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 431 / 2e-145 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 369 / 3e-121 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 364 / 2e-119 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT3G21230 350 / 1e-113 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230200 [exp] 1055 / 0 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 472 / 2e-161 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 459 / 1e-156 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.012G094800 [exp] 459 / 2e-156 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 441 / 1e-149 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 437 / 3e-148 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 437 / 7e-148 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 428 / 2e-144 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 426 / 2e-143 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037934 [exp] 750 / 0 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 740 / 0 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 453 / 6e-154 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 453 / 7e-154 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 451 / 3e-153 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 445 / 4e-151 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 451 / 3e-150 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10036994 [exp] 416 / 1e-139 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 411 / 1e-137 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 403 / 1e-134 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G031500.1 pacid=42806460 polypeptide=Potri.008G031500.1.p locus=Potri.008G031500 ID=Potri.008G031500.1.v4.1 annot-version=v4.1 ATGTCTGTCGAAGAATCGTGGACGACTAGAATCATCACGGAGGAGGAAGCTGGCACTGCCCAATCCAAGAGTGGTTTCGATCTACTAACCGGGATTTACC ACTCATTGCATCAGCTCGGAGAGAATTTCCAAATCCCCACCAGACACGACATAGACACTTCCACTTATGTGCTTTCCCAATTCCCTCATCCTGATCATGC TCAGACTAAAGTTGCCCTTATTGATTTGGCCACCAACCACCAAGTCAACTACTCACAGCTCCATCGATCCATCCGTGCCCTTGCATCAGGCTTGTACAAT GGCCTAGGAGTCCGAAAAGGTGATGTGGTGTTTCTTCTGTCACAAAACTCAATCTTGTATCCGACTATATGTCTCGCTATATTTTCCATTGGAGCAATCC TGAGTCCTGCCAATCCCGTCAACACAAAATCAGAAATTTCTAAACAGATACAGGACTCGGGTGCTAAACTTGTTATATCAGCACCAGAGGAGCTGCATAA GTTGTTAGAAATTGGAGTGCCTACACTAGTCACAACTCGTGAGTCGAATGGCGATTCACTTTCTGTCGAAGAACTGATTGAATACAGTGATCCGCTCGAG TTACCACAGGTCGGTATAACTCAATCAGACACTGCAGCTATACTATACTCTTCAGGTACTACTGGCACAAGCAAAGGTGTGATATTAACGCATTCAAACT TTATAGCCGTTATGACACTCCTCAAATGGTCTGTCTTTGCAACTTCATCGCAAAATGACACTTTCTTGTGCTTCATCCCTATATTTCACATCTACGGCCT TGCATTTTTTGGGTTAGGATTATTTTGTGCAGGGATTACGACCGTTCTGATGCGAAGATTTGATTTTCAAGCAATGCTTGATGCTGTTCAAGCTTACAAA ATTAATAACATACCTGCTGTCCCTCCAGTGATACTTGGGCTTGTGAAGAATGGCAGCAAAGTTAAGTGTGACCTGTCATCTTTAAGAAGGGTGGGATCTG GGGCTGCCCCGTTGAGCAAGGAATTGTCTGATGAGTTTAGGCGAAGGTTTCCGTGGGTAGAGCTAAGGCAAGGATATGGGCTTACAGAAAGCTGTGCTGC AGCAACGTTTTTCATCTCTGATGAGCAGGCTAAGAAACACCCAGCTTCTTGTGGACGGCTAGTGCCGACTTTCAGTGCTAAGATTGTGGATACTGAAACA GGATCAGCTTTGCCACCCGGTAGAAAAGGAGAGCTGTGGTTAAAGAGTCCTACTATAATGAAAGGGTACTTGGGAAATGAGGCTGCTACGGCTGCAACAA TTGATCCAGATGGGTGGCTAAAAACTGGTGATATGGGTTATCTTGATGAAGATGGATTTCTTCATCTTGTTGATCGGATAAAGGAGCTGATCAAGCATAA CGGGTATCAGGTGGCTCCGGCAGAATTGGAAGCTATTCTTCTGGGTCATCCCCAAGTACTTGATGCAGCAGTTATACCTGTGGAAGATGAAGAAGCTGGA CAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCGGAACTCACTGAAGAACAAGTCATTCAATTTGTTGCTAATCAGGTTGCCCCATACAAGAAAG TAAGAAGAGTGGGTTTCATCAGCGCCATTCCAAAGTCTGCTGCGGGCAAAATCTTGAGGAAGGAGCTTGTTTCACACAGCCAACAAATTACCTCGAAATT GTAA
AA sequence Show only first row Show all	>Potri.008G031500.1 pacid=42806460 polypeptide=Potri.008G031500.1.p locus=Potri.008G031500 ID=Potri.008G031500.1.v4.1 annot-version=v4.1 MSVEESWTTRIITEEEAGTAQSKSGFDLLTGIYHSLHQLGENFQIPTRHDIDTSTYVLSQFPHPDHAQTKVALIDLATNHQVNYSQLHRSIRALASGLYN GLGVRKGDVVFLLSQNSILYPTICLAIFSIGAILSPANPVNTKSEISKQIQDSGAKLVISAPEELHKLLEIGVPTLVTTRESNGDSLSVEELIEYSDPLE LPQVGITQSDTAAILYSSGTTGTSKGVILTHSNFIAVMTLLKWSVFATSSQNDTFLCFIPIFHIYGLAFFGLGLFCAGITTVLMRRFDFQAMLDAVQAYK INNIPAVPPVILGLVKNGSKVKCDLSSLRRVGSGAAPLSKELSDEFRRRFPWVELRQGYGLTESCAAATFFISDEQAKKHPASCGRLVPTFSAKIVDTET GSALPPGRKGELWLKSPTIMKGYLGNEAATAATIDPDGWLKTGDMGYLDEDGFLHLVDRIKELIKHNGYQVAPAELEAILLGHPQVLDAAVIPVEDEEAG QIPMAYVVRAAGSELTEEQVIQFVANQVAPYKKVRRVGFISAIPKSAAGKILRKELVSHSQQITSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	0	1
AT1G71480			Nuclear transport factor 2 (NT...		Potri.013G100600 [exp]	3.60	0.9929
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.006G134800 [exp]	6.78	0.9813
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	7.48	0.9919
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G190800 [exp]	10.53	0.9912
AT1G47710			Serine protease inhibitor (SER...		Potri.017G100900 [exp]	12.84	0.9838
					Potri.001G323900 [exp]	12.96	0.9567
AT2G26730			Leucine-rich repeat protein ki...		Potri.015G073500 [exp]	13.19	0.9732
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	14.83	0.9907	3
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	15.32	0.9907
AT3G20190			Leucine-rich repeat protein ki...		Potri.018G002600 [exp]	15.87	0.9898

Compare expression of checked genes

Potri.008G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.