Plant FIBer expression Database

Potri.008G031601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G031601.1 pacid=42806906 polypeptide=Potri.008G031601.1.p locus=Potri.008G031601 ID=Potri.008G031601.1.v4.1 annot-version=v4.1
ATGGCTGTTCCCCCAGAACTCCATAATGATGGAATTGAACCCCAATTTCATACGGGTTTGATTATGATAGATGGCAAACCTTGTTCAAGTCATGATGGGT
TCATGTTTAAACAGCCAGAGCTCAAGTCTCTTGACGAGCGCTGGAAGGAGCAGAAATCAGGAGCTCATCCGTGGACAAACTCCAGCGGTGAGTCCATGTT
GTCAAGCAAGGTTAAAGAGTCAGAGCCCGAGAATCTTGACTTGAATAAAGCTATTGAGGTGCCGAGTTCAGGAGTCCATCTGTGGACAAACTCCAGCGAG
TCCCTATCCTGCTATCTTACAGGTGGTCTTGCAGTTGATCCATGCTCAGGCGTTTTGAACCCCCAGCTTCTTAAACCAAAGCAACTTGAAATTGGGTTGA
GATTCGAGTACAGTGGTCCTTCTGCAACAGTTAAGCCATTTTTGCCTGAAACGGTACCGAAACAAGACCTGAAGAGCAAGCAGAGGTCTCGAGAACCAGA
ATGGAACAGCTTCAGCTCCAATTCCAACAGTTCGTCAACCTGTTCTATTCAATAA
AA sequence
>Potri.008G031601.1 pacid=42806906 polypeptide=Potri.008G031601.1.p locus=Potri.008G031601 ID=Potri.008G031601.1.v4.1 annot-version=v4.1
MAVPPELHNDGIEPQFHTGLIMIDGKPCSSHDGFMFKQPELKSLDERWKEQKSGAHPWTNSSGESMLSSKVKESEPENLDLNKAIEVPSSGVHLWTNSSE
SLSCYLTGGLAVDPCSGVLNPQLLKPKQLEIGLRFEYSGPSATVKPFLPETVPKQDLKSKQRSREPEWNSFSSNSNSSSTCSIQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G031601
[exp]
0 1
AT4G10850 SWEET7, AtSWEET... Nodulin MtN3 family protein (.... Potri.003G143100
[exp]
3.31 0.9168
AT3G27030 unknown protein Potri.001G328800
[exp]
5.65 0.9229
AT4G35770 ATSEN1, DIN1, S... SENESCENCE ASSOCIATED GENE 1, ... Potri.002G014900
[exp]
8.00 0.9500
AT2G43290 MSS3 multicopy suppressors of snf4 ... Potri.008G079066
[exp]
12.36 0.9390
Potri.011G102400
[exp]
15.09 0.9276
AT5G27690 Heavy metal transport/detoxifi... Potri.010G024700
[exp]
15.68 0.9250
AT5G62200 Embryo-specific protein 3, (AT... Potri.010G214400
[exp]
17.74 0.9204
AT1G32250 Calcium-binding EF-hand family... Potri.014G030200
[exp]
19.10 0.9264
AT1G06330 Heavy metal transport/detoxifi... Potri.002G005300
[exp]
19.79 0.8564
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.001G340300
[exp]
26.19 0.9244

Potri.008G031601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.