Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAB1.9
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 290 / 1e-100 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT3G09910 274 / 2e-94 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G43890 259 / 3e-88 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT1G02130 154 / 6e-47 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT5G59840 154 / 9e-47 Ras-related small GTP-binding family protein (.1) AT4G35860 152 / 4e-46 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT3G09900 151 / 6e-46 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT4G17530 150 / 7e-46 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT5G47200 150 / 8e-46 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT3G53610 150 / 1e-45 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229600 [exp] 370 / 3e-132 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.006G121400 [exp] 298 / 1e-103 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G097800 [exp] 291 / 4e-101 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G074400 [exp] 261 / 3e-89 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.005G063500 [exp] 259 / 1e-88 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.007G105500 [exp] 258 / 5e-88 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.009G027900 [exp] 155 / 1e-47 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.014G049400 [exp] 154 / 2e-47 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.010G208900 [exp] 153 / 1e-46 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022608 [exp] 281 / 5e-97 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 281 / 7e-97 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10014409 [exp] 277 / 2e-95 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 269 / 4e-92 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10040423 [exp] 262 / 4e-89 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10029745 [exp] 258 / 5e-83 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 247 / 2e-79 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10038671 [exp] 227 / 3e-75 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10037940 [exp] 227 / 5e-75 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10010999 [exp] 157 / 2e-48 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.008G032000.1 pacid=42806973 polypeptide=Potri.008G032000.1.p locus=Potri.008G032000 ID=Potri.008G032000.1.v4.1 annot-version=v4.1 ATGGCGGGTTCTTTTTCTAAAGGAGGGAATAATAGTTATGATTATTCGTTCAAGATTTTGTTGATAGGAGATTCTGGTGTCGGCAAGAGCAGTCTTCTTT TAAGTTTCATCTCCAGCTCTGTTCGTGACCTTTCTCCTACTATCGGTGTGGATTTTAAGGTCAAGATGCTCACTGTTGGTGGGAAAAGATTGAAGTTAAC TATTTGGGACACAGCTGGGCAGGAGCGGTTTGGAACATTAATAAGCTCTTATTATAGGGGTGCACATGGAATTATCCTAGTTTATGACGTGACACGGCGA GAAACTTTTGAGAACTTGTCCGATATATGGGCTAAGGAAGTGGAGCTCTACTCCACCAATCATGACGGCATCAAAATTCTTGTTGGAAATAAAGTTGATA GGGATAGTGAAAGAGCTGTAAGTAGAGAAGAGGGCATGGCTCTTGCCCAACAGCACAAGTGTTCATTTTTCGAATGTAGTGCCAAAACCAGTGAAAATGT TTTGCAATGTTTTAAAGAACTCACATTAAAGATACTTGAGGTACCTAGTTTATTGGAAAATGGCTCAGTAGTGGTGAAGCAACAGATTATGAAAGACAAA CAAGTATATCAAGCACCTCGTGGTGGTGGCAGTTGTTGCTCCTAA
AA sequence Show only first row Show all	>Potri.008G032000.1 pacid=42806973 polypeptide=Potri.008G032000.1.p locus=Potri.008G032000 ID=Potri.008G032000.1.v4.1 annot-version=v4.1 MAGSFSKGGNNSYDYSFKILLIGDSGVGKSSLLLSFISSSVRDLSPTIGVDFKVKMLTVGGKRLKLTIWDTAGQERFGTLISSYYRGAHGIILVYDVTRR ETFENLSDIWAKEVELYSTNHDGIKILVGNKVDRDSERAVSREEGMALAQQHKCSFFECSAKTSENVLQCFKELTLKILEVPSLLENGSVVVKQQIMKDK QVYQAPRGGGSCCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.008G032000 [exp]	0	1	Pt-RAB1.9
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	4.24	0.8880
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	6.00	0.8659	TGA3.1
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	6.78	0.8829
AT3G13780			SMAD/FHA domain-containing pro...		Potri.001G196700 [exp]	7.74	0.8325
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	8.36	0.8452
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.016G069700 [exp]	9.59	0.8561	Pt-BLH1.2
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	13.41	0.8350
AT4G13970			zinc ion binding (.1)		Potri.014G054600 [exp]	13.96	0.8510
AT3G62860			alpha/beta-Hydrolases superfam...		Potri.014G129000 [exp]	14.42	0.7989
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	19.59	0.8272

Compare expression of checked genes

Potri.008G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.