Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04390 207 / 2e-64 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 179 / 3e-53 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 156 / 1e-45 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 149 / 8e-43 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 89 / 4e-21 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53600 86 / 3e-20 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G60580 81 / 2e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28710 78 / 2e-17 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 77 / 5e-17 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G45120 79 / 1e-16 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229400 [exp] 426 / 2e-151 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 181 / 3e-55 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 172 / 1e-51 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 166 / 1e-49 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 126 / 1e-34 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 95 / 2e-23 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 94 / 6e-23 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.014G066200 [exp] 96 / 4e-22 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 89 / 4e-21 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023540 [exp] 166 / 2e-49 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 148 / 8e-43 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 137 / 8e-40 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 137 / 7e-39 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10037942 [exp] 132 / 3e-35 AT5G04390 198 / 2e-59 C2H2-type zinc finger family protein (.1) Lus10038674 [exp] 125 / 6e-33 AT2G28200 162 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 117 / 2e-31 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 91 / 9e-22 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 90 / 2e-21 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021509 [exp] 87 / 1e-20 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.008G032300.1 pacid=42807982 polypeptide=Potri.008G032300.1.p locus=Potri.008G032300 ID=Potri.008G032300.1.v4.1 annot-version=v4.1 ATGGAGGCCTCAGAGGAAGTCACGACCCGTGTTGCGAAAGGGAAGAGAACAAAGCGGTTAAGGGTTCAATCGGCAATCCCTTTTGGCTTAACAACTGATT CATCAAGCGGAGATGGTGGTACCAATTGGTCACCAACAACTTCCATCGATGAATTTCAAGATAGCACTGAAGAAGAAGAAGACATGGCCAATTGTCTTAT CCTACTTGCCAAAGGCCATTCAAGAGATTTCCCAAAACAACAACAACATCATCATCATCGAGATCATGATCATGATCATGATTCAAGAGGAGGGGTTTAC ACCGCCAAATTCAATAGTAGAAAATTCCTAGAAACCGCTAATTCCACAGGTTCTGGCAGGGTTGGTTACTATGTTTATGAGTGCAAAACATGTAGCCGAA CATTTCCATCTTTTCAAGCATTAGGTGGACATAGGGCTAGTCATAAGAAGCCCAAGGCAATCCACAATGATGAGAAGAAGCAAAATCTTTCGATATCTTC TGATGAAGAAGATGGACACTACAAGAATGTTTCATCTCTTTCTCTTCAATTGAGTGAAAACAATACTAATAGAGGTACGTACAGCAATCACAATAAAGGC AAGATTCATGAGTGCTCAGTTTGTGGTGCGGTGTTTACATCAGGACAGGCCTTGGGTGGTCATATGCGGCGGCACCGGGGTCCTCTTGTGTCTAGTACCA CAACCTTGTCATTAACACCAATGACTATAGAATCTGAGGAACCCAAGAGAGCAAGAAACGTACTTTCTTTGGATTTGGATCTCAATCTTCCAGCCCCAGA AGATGATAAATTTGCCTTTGCTTCCAAGCAACAACAAAAACAGCAGCAGCAGAAGCAACAAAACACATCTCTTGTCTTCACCAGCCCGGCTCTGGTGGAT TGTCATTACTGA
AA sequence Show only first row Show all	>Potri.008G032300.1 pacid=42807982 polypeptide=Potri.008G032300.1.p locus=Potri.008G032300 ID=Potri.008G032300.1.v4.1 annot-version=v4.1 MEASEEVTTRVAKGKRTKRLRVQSAIPFGLTTDSSSGDGGTNWSPTTSIDEFQDSTEEEEDMANCLILLAKGHSRDFPKQQQHHHHRDHDHDHDSRGGVY TAKFNSRKFLETANSTGSGRVGYYVYECKTCSRTFPSFQALGGHRASHKKPKAIHNDEKKQNLSISSDEEDGHYKNVSSLSLQLSENNTNRGTYSNHNKG KIHECSVCGAVFTSGQALGGHMRRHRGPLVSSTTTLSLTPMTIESEEPKRARNVLSLDLDLNLPAPEDDKFAFASKQQQKQQQQKQQNTSLVFTSPALVD CHY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G032300 [exp]	0	1
AT3G53980			Bifunctional inhibitor/lipid-t...		Potri.016G104300 [exp]	9.64	0.8401
					Potri.016G098300 [exp]	14.69	0.8400
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033932 [exp]	18.73	0.8400
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014900 [exp]	18.97	0.8363
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014700 [exp]	19.89	0.8355
					Potri.013G007900 [exp]	22.80	0.8381
AT3G22740		HMT3	homocysteine S-methyltransfera...		Potri.008G155900 [exp]	26.72	0.8116	HMT3.1
AT3G28960			Transmembrane amino acid trans...		Potri.008G086500 [exp]	26.72	0.8265
AT1G18350		ATMKK7, BUD1	MAP KINASE KINASE7, BUSHY AND ...		Potri.010G049500 [exp]	29.08	0.8214
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G165700 [exp]	31.62	0.8238	CHI3.11

Compare expression of checked genes

Potri.008G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.