Plant FIBer expression Database

Potri.008G032500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1)
AT3G44940 55 / 1e-08 Protein of unknown function (DUF1635) (.1)
AT2G28140 51 / 1e-07 Protein of unknown function (DUF1635) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G229200
[exp]
280 / 4e-95 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1)
Potri.009G006000
[exp]
95 / 4e-23 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1)
Potri.004G216100
[exp]
86 / 1e-19 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1)
Potri.001G307300
[exp]
65 / 1e-11 AT5G17680 597 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G002500
[exp]
47 / 1e-05 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.008G010100
[exp]
45 / 3e-05 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037944
[exp]
127 / 3e-35 AT5G22930 131 / 3e-37 Protein of unknown function (DUF1635) (.1)
Lus10038677
[exp]
93 / 3e-22 AT5G22930 121 / 2e-33 Protein of unknown function (DUF1635) (.1)
Lus10021419
[exp]
64 / 5e-12 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1)
Lus10016148
[exp]
49 / 5e-07 AT5G22930 104 / 4e-28 Protein of unknown function (DUF1635) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07795 DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence
>Potri.008G032500.1 pacid=42806569 polypeptide=Potri.008G032500.1.p locus=Potri.008G032500 ID=Potri.008G032500.1.v4.1 annot-version=v4.1
ATGGAAGATTACTCTGGTCCTCTGAACTGGCCATGCTTCTACCAAGATGAGGGGATCGAAGACTTGAGGCATTATCTCTTGTACACTACAGAACTAGAAA
CAGCAATTGTATCAGCGAAGGAGGAGATCACAAGAAGAGAATTTGAGATATTCCATCTCAAAGATCTTATAAGCAAGGCAATTGAGGAAAGGAATGAGGC
CCAGATACAATGCCAGGAACTGGTTTCTGACAAACTAGCCCTCCAACAACAACTGCTACAAAAACAGCCGGAAAATCAGCTGCAGCAAGAAATGCAGCAT
TTGAAGCAAGAATCCGCTTCACTCACAAGAACTTACAGCAGTGAAGATGAATCCAAGGCTAGCGACTCCAACAATCACAGCAGCTCTCCTGATTCAAGCA
AAGTCACTGTTCCCTCGCAGTTTACTGATCTAATTCCCCAGGAAACACTGCAATCATCTCTCCCAGAAGTGATCCTCAAGTTAGCAGCTGACAAGCCACT
GCCAGTGAAAGGGAAACTCTTGCAGGCAGTGAAGGAAGCCGGTCCACTTCTGCAGACCCTTCTCCTGGCTGGACCACTCCCTCAATGGCAGCACCCGCCT
CCCCAATTAGACTCCATTGAGATCCCACCAGTAACCATTTCTTCACCAACAGCTCGGCTAATACACCAAGACTCTTTCAACAGTTTCAGTTCTTGTTTGA
GCAAGAAGAGGGATCTTGAGCTCTGTGAAGGTCCCGATTCTTCTTCCCCTGCCAACAAGTACCAGAAAGTTGTCCCCCATTGA
AA sequence
>Potri.008G032500.1 pacid=42806569 polypeptide=Potri.008G032500.1.p locus=Potri.008G032500 ID=Potri.008G032500.1.v4.1 annot-version=v4.1
MEDYSGPLNWPCFYQDEGIEDLRHYLLYTTELETAIVSAKEEITRREFEIFHLKDLISKAIEERNEAQIQCQELVSDKLALQQQLLQKQPENQLQQEMQH
LKQESASLTRTYSSEDESKASDSNNHSSSPDSSKVTVPSQFTDLIPQETLQSSLPEVILKLAADKPLPVKGKLLQAVKEAGPLLQTLLLAGPLPQWQHPP
PQLDSIEIPPVTISSPTARLIHQDSFNSFSSCLSKKRDLELCEGPDSSSPANKYQKVVPH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22930 Protein of unknown function (D... Potri.008G032500
[exp]
0 1
AT1G06920 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAM... Potri.016G134200
[exp]
2.23 0.8129
AT1G21090 Cupredoxin superfamily protein... Potri.005G192800
[exp]
4.24 0.8201
AT1G21090 Cupredoxin superfamily protein... Potri.002G067600
[exp]
9.79 0.8272
AT5G22930 Protein of unknown function (D... Potri.009G006000
[exp]
15.29 0.7885
AT3G49290 ABIL2 ABL interactor-like protein 2 ... Potri.012G016900
[exp]
16.21 0.6818
AT5G19530 ACL5 ACAULIS 5, S-adenosyl-L-methio... Potri.010G089200
[exp]
22.18 0.7892
AT1G01300 Eukaryotic aspartyl protease f... Potri.002G171700
[exp]
23.97 0.7779
AT2G24960 unknown protein Potri.004G172900
[exp]
26.45 0.8061
AT5G25190 AP2_ERF ESE3 ethylene and salt inducible 3,... Potri.003G179900
[exp]
28.53 0.7897
Potri.001G456700
[exp]
32.90 0.7512

Potri.008G032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.