Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04320 71 / 2e-13 Shugoshin C terminus (.1.2) AT3G10440 71 / 3e-13 Shugoshin C terminus (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229100 [exp] 473 / 3e-167 AT5G04320 77 / 5e-15 Shugoshin C terminus (.1.2) Potri.004G216000 [exp] 105 / 2e-25 AT5G04320 57 / 4e-09 Shugoshin C terminus (.1.2) Potri.009G006100 [exp] 70 / 4e-13 AT5G04320 86 / 1e-18 Shugoshin C terminus (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021420 [exp] 62 / 2e-10 AT5G04320 78 / 1e-15 Shugoshin C terminus (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07557 [poplar] [flax] Shugoshin_C Shugoshin C terminus
Representative CDS sequence Show only first row Show all	>Potri.008G032600.19 pacid=42806706 polypeptide=Potri.008G032600.19.p locus=Potri.008G032600 ID=Potri.008G032600.19.v4.1 annot-version=v4.1 ATGGAGGGTATTCTGGTTCTTGATTCAGAAAACATCAACGTCGCAGGTAACAAAATAAAGGGAGAGAAACTGGGAGAAGGGTCCATGGTTGGAATTGCGC CAAGGAGAACGCTTGCTGACATTAGCAATTTTCCTGTATCAAGGAAAACGCTCGCTGAAGTTAGCAGTGTGTCGCAGCGAAACCAAGATGGGAAATCACA ATCTGTTCTAGTCGGTAAAGATTACATTGAGAAGCTCCAACGGGAAATCATGGCATTGACAAAGATTGTCGTGGATAGGAATAAAATTATCGAGTTGAGT GCTATTGAGTTGCAGAAGCTGAGAATCAGATTTCAGCAGTTACAGCAACAGAATCAGCACCTTGCACAAACAAACAGCCAGATGTTGGCGGAACTAAATG CAGGCAAAGATAAGCTTAAGGTATTTCAACATGAGCTGGGATGTAAGAATGGCTTGCTTGATGCCATAAATTTGGAGCTGAAGGAGAAAGCAAAGAAAGT TAGATGCCGGATTAAGAGAAATGAGGTTGAAACCATCAAAGGTGATGGGGCTGCACAACTCTCTCAACCAGAGGAGGAGAATAAACCATGTAACCCAAAA AGGAAACGCCAATCAAATGTTCAATCTTTGGAAACTCGTCCTGTTCAACCACAAACTAAAGAGAATGCTGACAAGAAGAGTGTTTGTTTGAGAAGGCAAT CTGCTAGGTTTAAGTCTGGAGAAGAAGAGCCTACTGAAAACAACGTTGATACAAAGAGGCACTCTGCTAGGTTCAAGTCTGAAGAACAACTCAATGAAAA GAACGATGACAAAAGGAGGATCTGTAGAAGAAAGCAATCCATTAGGATTAAGTCTGAGGCACAAATAGAAGAACCAACTGAAGATTTGTTTCAGACTGAT GATGCTAAATTTCATGTTCCTGCAATATATGGTGATCCAGTTCATGAAAGCTGTCCAACATTATCAGCTCCATCTGTAAAAATCGAATCTGAAACAGGGA ACAGTGCTCTCAGATTTGAAACTCAAGAACCACGAAGGACATCCCTTCGGCCACCACGTCGAGCAGCTGAGAAAGTCCAGTCCTACAAGGAAATTCCACT CAATGTGAAAATGCGAAGAAATACGGAAGAACATCATTTGCCAACAGCTATCCATGGCTAA
AA sequence Show only first row Show all	>Potri.008G032600.19 pacid=42806706 polypeptide=Potri.008G032600.19.p locus=Potri.008G032600 ID=Potri.008G032600.19.v4.1 annot-version=v4.1 MEGILVLDSENINVAGNKIKGEKLGEGSMVGIAPRRTLADISNFPVSRKTLAEVSSVSQRNQDGKSQSVLVGKDYIEKLQREIMALTKIVVDRNKIIELS AIELQKLRIRFQQLQQQNQHLAQTNSQMLAELNAGKDKLKVFQHELGCKNGLLDAINLELKEKAKKVRCRIKRNEVETIKGDGAAQLSQPEEENKPCNPK RKRQSNVQSLETRPVQPQTKENADKKSVCLRRQSARFKSGEEEPTENNVDTKRHSARFKSEEQLNEKNDDKRRICRRKQSIRIKSEAQIEEPTEDLFQTD DAKFHVPAIYGDPVHESCPTLSAPSVKIESETGNSALRFETQEPRRTSLRPPRRAAEKVQSYKEIPLNVKMRRNTEEHHLPTAIHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10440			Shugoshin C terminus (.1)		Potri.008G032600 [exp]	0	1
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Potri.013G094800 [exp]	6.40	0.8416
AT3G28430			unknown protein		Potri.018G140800 [exp]	8.48	0.8352
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.005G058000 [exp]	8.71	0.8353
AT1G45150			unknown protein		Potri.014G180700 [exp]	9.59	0.8320
AT5G53850			haloacid dehalogenase-like hyd...		Potri.011G118132 [exp]	10.48	0.7454
					Potri.016G125901 [exp]	12.68	0.7794
AT3G14980			Acyl-CoA N-acyltransferase wit...		Potri.001G392801 [exp]	13.41	0.7934
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Potri.002G139200 [exp]	13.49	0.8127
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	15.49	0.8105
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.001G150800 [exp]	16.43	0.8010

Compare expression of checked genes

Potri.008G032600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.