Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04310 557 / 0 Pectin lyase-like superfamily protein (.1) AT3G54920 522 / 0 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT3G53190 516 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 457 / 6e-158 Pectin lyase-like superfamily protein (.1.2) AT4G24780 440 / 3e-152 Pectin lyase-like superfamily protein (.1.2) AT1G04680 440 / 1e-151 Pectin lyase-like superfamily protein (.1) AT1G67750 437 / 4e-151 Pectate lyase family protein (.1) AT5G63180 437 / 2e-150 Pectin lyase-like superfamily protein (.1) AT3G27400 431 / 2e-148 Pectin lyase-like superfamily protein (.1) AT4G13210 428 / 1e-147 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229000 [exp] 739 / 0 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 531 / 0 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 457 / 4e-158 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 449 / 6e-155 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 446 / 2e-154 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 432 / 2e-149 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 434 / 4e-149 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 429 / 1e-147 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 427 / 5e-147 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037945 [exp] 586 / 0 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10023542 [exp] 562 / 0 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014414 [exp] 536 / 0 AT3G53190 703 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023917 [exp] 516 / 1e-180 AT3G53190 696 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 449 / 4e-155 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10014887 [exp] 444 / 8e-154 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 445 / 2e-153 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022310 [exp] 441 / 3e-152 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 441 / 3e-152 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 440 / 1e-151 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.008G032700.1 pacid=42808831 polypeptide=Potri.008G032700.1.p locus=Potri.008G032700 ID=Potri.008G032700.1.v4.1 annot-version=v4.1 ATGAAGCTTTCTAATTTCTGCGTTCTCTTAATTTGCCACTTTACTTCATTCATTCCTTTCATTATTGAAACTACTGCCTTCAATCTCACCCTTCCACATC AACATCCAGACCCTGAGGCTGTTGCTGAAGATGTAAAACGGAGAGTCAATGCATCTCTATCAAGAAGAAACCTTTTGTCCATTCAAGAAAAGGACCAATG CCAAACCGGAAACCCCATCGACGATTGCTGGAGATGCGACCCCAATTGGGCTAACAACCGCCAACGTTTAGCTGACTGCGCCATTGGGTTTGGTCAAGGC TCATTAGGTGGTAGAGGTGGCCAGATCTATCTGGTCACTGACTCCTCGGACCATAACCCAGCCAACCCCACACCAGGCACGTTACGTTATGCTGTTATCC AAGACCAACCTCTTTGGATCATCTTTTCTTCGGACATGGTCATTAAGCTCAAACATGAACTTATTTTCAACAGTTACAAAACTATTGATGGCCGTGGCGC AAATGTGCACATTACAGGAAATGGGTGCATAACACTTCAACATGTGACACATATTATTATCCACAACATCCACGTTCACCATTGCAAGCCTTCTGGTAAC ACTAATATAGCATCATCACCAACACATGTTGGACAGAGAGGGGAATCGGATGGTGATGGTATTTCCATCTCTGGGTCACAGAAGATTTGGATTGATCATT GTTCATTATCGTATTGTACTGATGGTTTGATTGATGCTATACTGGGGTCTACTGCGATTACCATATCAAACAACCATTTTACGCACCATAATGAAGTGAT GCTATTGGGGCACAATGATAAGTATGTATTGGACTCAGGAATGCAAGTTACTATAGCTTTTAATCACTTCGGTGTAGGGCTGGTCCAGCGTATGCCAAGG TGTAGAAGAGGGTATATACATGTGGTGAACAATGATTTTACAGCTTGGGAGATGTATGCTATCGGTGGTAGTGCAAACCCTACCATAAATAGTCAAGGGA ATCGATATACTGCACCAGCCGATGATAATGCCAAAGAGGTAACAAAGAGGGTGGACACAAACGAGGGAGAGTGGGCAGATTGGAATTGGAGAACAGACGA GGACATCTTGGTAAATGGAGCCTTCTTTGTGCCCTCAGGAGCTGGTTTGAGTGAGCAATATAGCAAAGCCTCCAGCGTGGAACCCAGGTCTGCTAGGTTA ATTACAGAACTCACCATGAATGCTGGTGTCTTTGGTGACCCCAGAGATGATAGCGGGGGCATTTCTAATCCTGGATTCAGCGGTGCTGGGACCAGTACTG TCACGCCCACCACCGGCACTCAAGGGACGGGGGCCGGTGGCGGTACTGATGGCGACTACTTTGGAATGATATTCGGCAGCGGCTCTTCACTACCCCGACC TCCCACATCTATTAGCTTAATCTTTTTGTCTCTTCTAATTATTCTAGCTTTGAGCACCATCACCAACAATGGTGCCTTGTTATCTTTCCCCTTATTGTCA TTATAG
AA sequence Show only first row Show all	>Potri.008G032700.1 pacid=42808831 polypeptide=Potri.008G032700.1.p locus=Potri.008G032700 ID=Potri.008G032700.1.v4.1 annot-version=v4.1 MKLSNFCVLLICHFTSFIPFIIETTAFNLTLPHQHPDPEAVAEDVKRRVNASLSRRNLLSIQEKDQCQTGNPIDDCWRCDPNWANNRQRLADCAIGFGQG SLGGRGGQIYLVTDSSDHNPANPTPGTLRYAVIQDQPLWIIFSSDMVIKLKHELIFNSYKTIDGRGANVHITGNGCITLQHVTHIIIHNIHVHHCKPSGN TNIASSPTHVGQRGESDGDGISISGSQKIWIDHCSLSYCTDGLIDAILGSTAITISNNHFTHHNEVMLLGHNDKYVLDSGMQVTIAFNHFGVGLVQRMPR CRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPADDNAKEVTKRVDTNEGEWADWNWRTDEDILVNGAFFVPSGAGLSEQYSKASSVEPRSARL ITELTMNAGVFGDPRDDSGGISNPGFSGAGTSTVTPTTGTQGTGAGGGTDGDYFGMIFGSGSSLPRPPTSISLIFLSLLIILALSTITNNGALLSFPLLS L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04310			Pectin lyase-like superfamily ...		Potri.008G032700 [exp]	0	1
					Potri.018G139200 [exp]	3.16	0.8873
AT4G18650			transcription factor-related (...		Potri.004G058200 [exp]	6.16	0.8272
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	7.61	0.8829
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G096900 [exp]	9.32	0.8704	LAC1c,Pt-LAC2.3
AT1G69430			unknown protein		Potri.006G159000 [exp]	14.31	0.8611
AT1G76070			unknown protein		Potri.005G245600 [exp]	14.96	0.8320
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	18.49	0.8589
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	18.97	0.8260
AT1G69430			unknown protein		Potri.006G155900 [exp]	23.66	0.8566
AT5G26330			Cupredoxin superfamily protein...		Potri.010G089900 [exp]	27.34	0.8624

Compare expression of checked genes

Potri.008G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.