Plant FIBer expression Database

Potri.008G032800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04290 635 / 0 SPT5L, KTF1 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
AT4G08350 203 / 7e-53 GTA2, GTA02 global transcription factor group A2 (.1)
AT2G34210 189 / 2e-48 Transcription elongation factor Spt5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G228766
[exp]
913 / 0 AT5G04290 606 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
Potri.010G228883
[exp]
379 / 7e-118 ND /
Potri.004G162500
[exp]
215 / 1e-56 AT4G08350 1394 / 0.0 global transcription factor group A2 (.1)
Potri.009G124200
[exp]
206 / 8e-54 AT4G08350 1372 / 0.0 global transcription factor group A2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037946
[exp]
738 / 0 AT5G04290 731 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
Lus10038680
[exp]
736 / 0 AT5G04290 727 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
Lus10028630
[exp]
199 / 3e-51 AT4G08350 1357 / 0.0 global transcription factor group A2 (.1)
Lus10018928
[exp]
196 / 1e-50 AT4G08350 1358 / 0.0 global transcription factor group A2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0439 NusG-like PF03439 Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section
Representative CDS sequence
>Potri.008G032800.5 pacid=42806341 polypeptide=Potri.008G032800.5.p locus=Potri.008G032800 ID=Potri.008G032800.5.v4.1 annot-version=v4.1
ATGTCGTCGAAGGGGAAGGGAAAGGCCGTCGCTACCGGCGGAGATAAACGGAAACGTGGCGATGTTGACGACGACAAGACCGGTGGTGGAAAGATGAAAA
GGAACCGTGCGGTTCTTCAGTTCTTCGAAGACGAAGCTGATCATAGTGATTACGAGAGTGATGATAGTGATCTTAATTTTGACATTGAAGATTTTATGGA
TGAAGAATATGATGTAGAGCTGAAAGTAAAGAATGATCCACCAAAAACCCAAAATGTTCCAATTGTTCCCAAAGAGGAGCAGATGGACGGGGAAGAATTT
GATAAGATGATGGAAGAGCGTTTCAAGAATAATCCCAGATTTCGTTTTGCTGAAGATGCTGATGAGGCTAAAAGATCCATGGAAAGAAATTATCTTGAAC
CTTCTGCAAAGGATCCAACTATCTGGAAAGTGAAATGCATGGTTGGACGTGAGAGGCATTCAGCTTTTTGCCTCATGCAAAAGTTTGTTGACTTGAAGTC
TCTGGGTACCAAACTGCAGATAATATCTGCATTTTCCATTGATCATGTTAAGGGTTATATTTATATTGAAGCTGACAAGCAAATTGATATTATTGAGGCA
TGTAAAGGGCTTTGTAGCATATATTCTAGCAGGATGGCTCCAGTTCCTAAAAATGAAGTGTCTCATCTGCTCTCCATCCGAAAAAGTTGTAATCAAGTTT
CTGAGGGCATGTGGGCTCGTGTAAAGAATGGGAACTATAAGGGGGACTTGGCGCAGATTGTGGCTGTGAATGATGTGCGGAAAAAAGCAACAGTGAAGCT
GATTCCAAGAATTGATTTGCAAGCATTGGCGCAAAAATTTGGAGGGGGACTTGCAAAGAAGAAAGCTGCCATACCAGCTCCGAGACTAATCAGCTCAAGT
GAACTTGAGGAGTTCCGGCCTCTTATTCAATATCGACGTGACCGTGATACTGGCAAGATGTTTGAGGTTCTTGATGGCCTGATGCTCAAGGATGGATATT
TATATAAAAGAGTATCTATAGATTCTTTAAGCTGCTTGAGCGTTTTGCCTTCAGAAGAGGAGTTGTTGAAGTTCAAGTCTTCTGAGAATAATGAGTCAGA
GAATTTGGAATGGCTTGCACAGATATATGTTGGACAGAAGAAAAAACGGATAATTGGAAATGAGAAAGGTGGTGAGAAAGGAGAGGGCTCATCAGCATCC
GGGCAGAATAGATTCGAACTGTATGATCTTGTGTGTTTCGGCCGCAAAGATTTTGGTCTTATTGTTGGTATGGAGAAAGATGAATCTTACAAGATTCTAA
AACATGGACCTGAAAAACCTGATGTGGTTACTGTTGCATTACGCGATCTAAAGAATGGGCCCACTGATATGAAGTTTACTGCTTTAGATCATCACAAGAA
AACCATGTCAGTTAACGATACTGTTAAGGTTTTGGAAGGTCCATTGAAGGATAGGCAAGGAATTGTTAAGCAAATCTACAGAGGCATCATATTTATATAT
GATCAGAATGAAACAGAAGATTGTGGTTATTTCTGTTCGAAAGCTCAAATGTGTGAAAAAATCAAGCTTTCCTTTGATGCTTGCTATGGAAAGGATAGCG
AATCAGGCTCTTTAGGTTTTGAAGATTTCCCATCATCTCCCAAACCCCCCTTATCACCTAAAAAACCGTGGCAAGCGAAAGAAAATAACCGTGGCTGTAT
GCATTTCAACCCAGGCGACAAGGATGGATTGTTCTCCATTGGTCAAACCTTGAGAATCCGAGTAGGACCTTTGAAGGGGTATCTATGCCAGGTCTTGGCC
ATACGCTATTCTGATGTTACTGTGAAGCTTGGTTCTCAGCAGAAAGTTCTTACAGTTAAAAGTGAGCATCTTTCTGAGCTCCGTGCAAAGAGCTCCGCCA
TGTCTGTAAGTGACGATCCACGATCCAGTTCTTTCAAACCATTTGATTTACTTGGAAATGAAGGTGGCTCTGGAGGTTGGACGGGTGGAGCTGGGACATC
AACTGAAGGTGATGGCTGGAACGTTGGTGGCCTCTCCACTGAAAGAACTTCTTGGTCTAGTCCGGGCTTCACGCTTCAACCTGAAACCAACCCTGTAAAT
CCATCAAGTTCTGTAGATAATGAACCAAATAAAGATGATACTTGGGGGAGTCAAGCTAAAGCAAAACAGACTTCATCTCGGGGTGCAGCTGCAGCTGACT
CTTGGAACAAAGCTGCTTCTAACATTGGTTCTAGCAGTGGTGCATCTGTGGGCTGGGGTAAAGCAACTTTATCCAATGAAGATCTGCCAGGCTCTTCAAG
AGGTTCTGGAGATAACTGGGGTCAAGGAATCCTAAGAGATGAAAAATCTTCTTTTGATGCTGCAGCATCTGCTTGGGACAAAGGAAAGACTGTTATTGGA
AACCAAAATGGCAGCTGGGGTGAGGCAGCTACCGGGAAGAATCAAGTGGGTTCGTGGGGAAAATGTAATGATGCAGTTGAAGCAGGATCCTGGGAGAAGA
ATAAAAGCTCTGGCACAGGAGAGGACTGCTTGAGTAACAAGACTACCGGGTGGAATCAACAGAAATCACAAGATGGAGGAGACCCTTGGGGTAAAGCTGC
AGAAGAACAAGATAAGGGTGCTGCACAAAATGATTCTTGGGGTAAAGCTGCAGAGAAGCGGGAAAGCAAAAATGGCGCCGAAAAGCCAACTGAGGGTTGG
GGTAAGGCAGGCAGGAGCAGCACTCAACCAGAAGCTGATAAAGGAAGTGGCTGGATGAAAGACAAAGCTGATAGTGCAGGTCAAACTTCAAGTTGGGGCA
ATGGGAAATTTTTTAGTGAAGATGCAACTGAGTGGAATAAAGATGGATCTAGTAACCAGAATCAGACTGATAGCTGGAATAAGCCAAAGGCCTTTGGTTC
TGATAGGGGATCTTGGAATAAACAGGGAGAATCCTCTTGGGGTAAACAAGAGGGGGGATCTTGGGGTAATGGGAATAGACCAGATGGAGATCAAGAGTTT
GGTGGCTGGAACAAGACATCTGATGGGGGTCATGGTTCAGGTGGGAGCAGGGGAAGAGGAGGTGGTCGTGGTGGTAGAGATCAGTTTGGCCGAGGAAGAT
CCTCTGGTGATGGTCAGTCTTCAGGTTGGAAAGGTGGAGAAAACAATTCAACTGGCAATGATCAAGGAGGTGGCTGGGGCAAATCCAAGGGGTTTGAGGG
AAGTAGAGAGGGTGGATGGAAGTCTGTTTCTTCTGGGGGTGATAGTGGATCAGGTTGGAACAAAAGTGGGGAAGCAGATAAAGAGACCGGTGGGAGTGTG
GACAAATGGAACAGCGGGAACAAATCGAGCTGGAACAATGATCAAACTCAAGGTCACAATGGGAGCAAAGGTTTTGTTTCTAATCTGTCTTCAGAAGGGC
AAAATGATGGTGCTAGTTGGAGAGCACCCAAATCAAGTGGCATGAACTCGTCTTCTGGATGGAACAGTGCTTCTGCTGTGGATGAAGTACCAGGTGGAAG
TTGGGGTGGAGGCAGCAAGTGGAACTCAGGGAAAGCTTCAACTGGTGACAATACAACTGGATGGAAAACTGGAATGAGTGGGGCTGGCACCCAGCCGTCT
GACTGGGGTGCTCCAAAAGCTTCTAAGGGAGACCAGTCATCAAGCTGGGATAATAAAACTGGTCATGTAGATGCCAACCAGTCATCTGGTTGGGGTAGTA
AAAGCTGTTGGAATCAGAAATCTCCTGAACTTGAAAAGGACAGTGAGATAGATGGAAACCGGAATTCTAGCTGGGGTAAGAAAAGCAATTTGAAATCTGA
ATCAAGTGATGTAGGTGGAAATGCTGACTCTGACTGGGGCAAGAAGGGCAATTGGAACTCCGAATCCAATAATGCTGATGGAAATCAAGATTCTGGTTGG
GCCAACAAAAGCAACTGGAACTCTGGGTCCAAAGATGCAAACCAAGGTTCTAGTTGGGCCAAGAAAAGTAATTGGAACTCTGGATCTAGTGATGTGAACC
AAGAATCTGGTTGGGACAAGAAAAGCAGTTGGAGCTCTAGATATGGTGATGGTAACCAGGATGCTTCTGTAGCCTGTGATGATGAAAACCAAACTGAGAC
CTGTGGTAATAGGGCAGGTGGTGGGAATTGGAGAGGTGGTTTTGGTGGTAGGGATGGTTCAGACAGAGGGGGTTTTAGAGGTAGAGGTGACAGAGGAGGC
TTTGGAGGTAGAAATGGTTCAGACAGGGGGGGTTTTGGAGGTAGAGGCAGATCCGACAGAGGTGGATTTGGAGGCAGAGGTGGTCCAGACAGAGGGGGCT
TTAGAGGTAGAGGGGACAGAGGAGGCTTTGGTGGTAGAGGCAGAGGAAGGAGGGATCAAAATGGTGGTTGGAGTGACAACAATTCTGCTGAAGATAAGAC
CTTTGACTGGAAGAATGGGGCAAACAATAGCAGTGGAGGATGGAAAAATAATGGTGGTGGAAGCAGTTGGAACCGAGGAGGTGGTGATAGGGGCCACCAA
CAGAATAGCTGGAATTCTGGAAGTGGTGGAACAAGCAATGAAGGTGGTGGTTGGAGTAGCCAAGGTTCAGGCTGGAACCAGTCAAGAACGGCCAAAGATA
GTGGTGGCAGTGACCTTGCTGGTGGTTGGAACAAGGGAACCTGTGCAAACAGCGATGTTGCCTGGGGTCAAGGAAACAGCTGGAAGTCATCAAATCCTTC
TGGTGAGGGCTGGAGTAAATCAAGCAAAGAAATTAAAGGTTCAGAAGATCAAGGGGGTGGCTGGAACAAAGGACCTTCTGGTGCAAACAGCGATGCTGCC
TGGGGTCAAGGAAACAGCTGGAAGTCATCAAATCCTTCTGGTGAGGGCTGGAGTCAATCAAGCAAAGAAATTAAAGGTTCGGAAGATCAAGGGGGTGGCT
GGAACAAAGGACCTGGTTCCAGTGCTCAAGGTGGTGGCTGGGGGACAAAAGGAGCAGGCTCAGGAGAAGCAGGGATGACTGGGGGTGATGCTATGACCTG
GAATCAATCTGGTGCTTCTGGCAGAGGCCAATCATCTGGTTGGAGTGGATCAACAGAGGGAAAAGAAGGAACTAATACAGGCGGGGAACTAACTGATCCG
TGTGGTAAAGCATCATCAACAAGTTCTTGGAATCAATCAAGCAAAGACGTTGAAGGTTCTGATGACCAAGGGAGTGGCTGGAACAAAGGACCCAGTTCTA
ATGCTCAAGCTGGTGGCTGGGGGGACAAAGGAGCAGGTTTGGGAGATGGAGGCGATGCTAAGACCTGGAATCAATCAAGTGCTTTTGGCGGAGGGCAATC
ATCTGGTTGGGGTCAATCTTCAGAGGTGAAAGGAGCAAATGAAACTGGTAAGCCGGCTGATCCATGGGGTAATAAAGCATCAACAAGCTCTTGGGGAAAC
GAAGGGAATGATGGAAGTAGCAAAGGGGGGTGGTAA
AA sequence
>Potri.008G032800.5 pacid=42806341 polypeptide=Potri.008G032800.5.p locus=Potri.008G032800 ID=Potri.008G032800.5.v4.1 annot-version=v4.1
MSSKGKGKAVATGGDKRKRGDVDDDKTGGGKMKRNRAVLQFFEDEADHSDYESDDSDLNFDIEDFMDEEYDVELKVKNDPPKTQNVPIVPKEEQMDGEEF
DKMMEERFKNNPRFRFAEDADEAKRSMERNYLEPSAKDPTIWKVKCMVGRERHSAFCLMQKFVDLKSLGTKLQIISAFSIDHVKGYIYIEADKQIDIIEA
CKGLCSIYSSRMAPVPKNEVSHLLSIRKSCNQVSEGMWARVKNGNYKGDLAQIVAVNDVRKKATVKLIPRIDLQALAQKFGGGLAKKKAAIPAPRLISSS
ELEEFRPLIQYRRDRDTGKMFEVLDGLMLKDGYLYKRVSIDSLSCLSVLPSEEELLKFKSSENNESENLEWLAQIYVGQKKKRIIGNEKGGEKGEGSSAS
GQNRFELYDLVCFGRKDFGLIVGMEKDESYKILKHGPEKPDVVTVALRDLKNGPTDMKFTALDHHKKTMSVNDTVKVLEGPLKDRQGIVKQIYRGIIFIY
DQNETEDCGYFCSKAQMCEKIKLSFDACYGKDSESGSLGFEDFPSSPKPPLSPKKPWQAKENNRGCMHFNPGDKDGLFSIGQTLRIRVGPLKGYLCQVLA
IRYSDVTVKLGSQQKVLTVKSEHLSELRAKSSAMSVSDDPRSSSFKPFDLLGNEGGSGGWTGGAGTSTEGDGWNVGGLSTERTSWSSPGFTLQPETNPVN
PSSSVDNEPNKDDTWGSQAKAKQTSSRGAAAADSWNKAASNIGSSSGASVGWGKATLSNEDLPGSSRGSGDNWGQGILRDEKSSFDAAASAWDKGKTVIG
NQNGSWGEAATGKNQVGSWGKCNDAVEAGSWEKNKSSGTGEDCLSNKTTGWNQQKSQDGGDPWGKAAEEQDKGAAQNDSWGKAAEKRESKNGAEKPTEGW
GKAGRSSTQPEADKGSGWMKDKADSAGQTSSWGNGKFFSEDATEWNKDGSSNQNQTDSWNKPKAFGSDRGSWNKQGESSWGKQEGGSWGNGNRPDGDQEF
GGWNKTSDGGHGSGGSRGRGGGRGGRDQFGRGRSSGDGQSSGWKGGENNSTGNDQGGGWGKSKGFEGSREGGWKSVSSGGDSGSGWNKSGEADKETGGSV
DKWNSGNKSSWNNDQTQGHNGSKGFVSNLSSEGQNDGASWRAPKSSGMNSSSGWNSASAVDEVPGGSWGGGSKWNSGKASTGDNTTGWKTGMSGAGTQPS
DWGAPKASKGDQSSSWDNKTGHVDANQSSGWGSKSCWNQKSPELEKDSEIDGNRNSSWGKKSNLKSESSDVGGNADSDWGKKGNWNSESNNADGNQDSGW
ANKSNWNSGSKDANQGSSWAKKSNWNSGSSDVNQESGWDKKSSWSSRYGDGNQDASVACDDENQTETCGNRAGGGNWRGGFGGRDGSDRGGFRGRGDRGG
FGGRNGSDRGGFGGRGRSDRGGFGGRGGPDRGGFRGRGDRGGFGGRGRGRRDQNGGWSDNNSAEDKTFDWKNGANNSSGGWKNNGGGSSWNRGGGDRGHQ
QNSWNSGSGGTSNEGGGWSSQGSGWNQSRTAKDSGGSDLAGGWNKGTCANSDVAWGQGNSWKSSNPSGEGWSKSSKEIKGSEDQGGGWNKGPSGANSDAA
WGQGNSWKSSNPSGEGWSQSSKEIKGSEDQGGGWNKGPGSSAQGGGWGTKGAGSGEAGMTGGDAMTWNQSGASGRGQSSGWSGSTEGKEGTNTGGELTDP
CGKASSTSSWNQSSKDVEGSDDQGSGWNKGPSSNAQAGGWGDKGAGLGDGGDAKTWNQSSAFGGGQSSGWGQSSEVKGANETGKPADPWGNKASTSSWGN
EGNDGSSKGGW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04290 SPT5L, KTF1 SPT5-LIKE, kow domain-containi... Potri.008G032800
[exp]
0 1
AT1G65440 GTB1 global transcription factor gr... Potri.016G029200
[exp]
1.41 0.9117
AT1G60200 splicing factor PWI domain-con... Potri.010G094700
[exp]
3.16 0.8658
AT2G13370 CHR5 chromatin remodeling 5 (.1) Potri.009G047800
[exp]
3.74 0.8986
AT3G58110 unknown protein Potri.019G091700
[exp]
4.58 0.8691
Potri.005G043750
[exp]
5.19 0.8853
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Potri.003G022100
[exp]
5.29 0.8816 CHR928,PIE1.4
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.001G179800
[exp]
5.47 0.8461
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.001G289800
[exp]
6.24 0.8580
AT2G16940 Splicing factor, CC1-like (.1.... Potri.009G137200
[exp]
7.07 0.8775
AT5G03780 TRFL10 TRF-like 10 (.1) Potri.002G005600
[exp]
7.93 0.8360

Potri.008G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.