Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 830 / 0 Major facilitator superfamily protein (.1) AT2G28120 682 / 0 Major facilitator superfamily protein (.1) AT1G74780 338 / 3e-109 Nodulin-like / Major Facilitator Superfamily protein (.1) AT5G14120 312 / 1e-98 Major facilitator superfamily protein (.1) AT3G01930 303 / 4e-95 Major facilitator superfamily protein (.1.2) AT5G50520 301 / 1e-94 Major facilitator superfamily protein (.1) AT5G50630 301 / 1e-94 Major facilitator superfamily protein (.1) AT2G34350 294 / 3e-92 Nodulin-like / Major Facilitator Superfamily protein (.1) AT4G34950 286 / 8e-89 Major facilitator superfamily protein (.1) AT2G16660 270 / 1e-82 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122400 [exp] 783 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 686 / 0 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 679 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 670 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 313 / 6e-104 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 322 / 2e-102 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.015G067000 [exp] 321 / 3e-102 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.017G064201 [exp] 319 / 3e-101 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 307 / 2e-96 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037948 [exp] 808 / 0 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 801 / 0 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 796 / 0 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 713 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 702 / 0 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 594 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 540 / 0 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 315 / 2e-99 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035203 [exp] 313 / 7e-99 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 302 / 8e-95 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.008G032901.2 pacid=42806899 polypeptide=Potri.008G032901.2.p locus=Potri.008G032901 ID=Potri.008G032901.2.v4.1 annot-version=v4.1 ATGGTGGTTGCTGGTCCAGGTGGTGGTGGAGGTATTGGTGGTGTGGCTGACATGAAGAGTCTGACCACCCAGATCGTCACCGGCCGGTGGTTCATGGTGT TCGCATCACTTCTAATCATGTCGGCTGCTGGTGCAACCTATATGTTTGCACTCTACTCCCCTGATATCAAAGATGCCCTGGGTTATGATCAAACCACCCT TAATTTGCTTAGCTTCTTCAAAGATGTAGGTTCCAATGTTGGTGTCCTCTCGGGCCTAATCAATGAGGTCACTCCTCCATGGGTGGTTCTGTCAATGGGG GCAGTCTTGAATTTTTTTGGTTACTTCATGATATGGCTTGCCGTGACCAAAAAAATTACTGGTGTTCAAGTGTGGCATATGTGCTTATACATATGTATAG GTGCTAATTCTCAATCTTTTGCCAACACTGGCTCTCTTGTCACTTGTGTCAAGAATTTCCCAGAAAGCCGTGGGAGTGTGCTAGGGATCTTGAAGGGTTA TGTTGGTCTTAGTGGCGCAATTATAACTCAATTTTTCCATGCTTTTTATGGGGGTGATACGAAGGCTTTGATTTTGCTCATAGGATGGCTTCCTGCTGCA ATCTCTTTTGCCTTCTTGCGTACCATTCGAATCATGAAGGTAATTCGCCAACCGAATGAGCTCAAAGTTTTCTACAATTTTCTCTATATATCTCTTGCCC TGGCCGGGTTTTTGATGATCGTGATCATCCTGGAGAAAACGCTTAGTTTTACTCGAGGTGAATATGGTGGTAGTGCTGCCGTGGTGATTCTCATGCTCTT TGTGCCACTTGGTGTTGTTATTGTAGAAGAATACAAGATTTGGAATAGCAAAAGGCAAGCCTTGAATGACCCTTCTCCACTGAAAATTGTCACTGAAAAG CCACCACCAAGCCAAGAAATTCCTGCCCCGTCTCCTCCCCCGCCATCTACATCTAGTGATAAAAAATTGGTCACCGTAGAGTCATCACCGAGCACCACAG ACAACAGCAACGTATCTTGTTGGAAAACTGCTTTTAGGCCACCAGACAGAGGAGAGGATTTCACCATACTACAAGCTCTTTTTAGCGTTGACATGCTCAT CCTCTTCTTAGCTACAATTTGTGGTATTGGTGGCACGTTAACGGCTATAGACAACTTGGGTCAGATTGGAACTTCATTAGGGTACCCTAAAAAGAGCATT AGCACTTTTGTGTCATTGGTGAGCATCTGGAATTATCTTGGTCGAGTTGTATCAGGTTTTGGGTCTGAACATGTCTTGAAAAAGTACAAATTCTCCCGCC CTTTGCTGTTCACCCTAACCCTCCTCCTTTCTTGTGTTGGTCACCTCCTGATTGCCTTCAATGTTTCCGGTGGTCTCTACGTGGCGTCAGTCATTATCGG CTTTTGTTTTGGTGCTCAATGGCCATTACTCTTTGCTATCATCTCAGAACTATTTGGGCTCAAGTACTACTCTACTTTGTACAATTTCGGAGCTGCGGCT AGCCCTGTTGGGTTATATCTACTTAATGTGAGACTGACGGGGCATTTATATGATAAAGAGGCAGGGAAGCAATTGGCAGCGAAGGGTCTTAAAAGAAAGC ATGGCGATGCCCTGGATTGCGTTGGCACCGAGTGCTTCAGGCTGTCCTTCATTATCATTACAGCTGCAACATTGTTCGGTACCTTTGTTTCATTAATTTT GGTGCATAGGACTAGGAAGTTCTATAAAAGTGACATCTACAAGAAATTCCGAGAGGCGGCAGAGGAAGCAGAGACAGAAATGGCGGTATCCGGGAATGGC GTCGGACGGGCGGAAACAAAGAATGGCTAG
AA sequence Show only first row Show all	>Potri.008G032901.2 pacid=42806899 polypeptide=Potri.008G032901.2.p locus=Potri.008G032901 ID=Potri.008G032901.2.v4.1 annot-version=v4.1 MVVAGPGGGGGIGGVADMKSLTTQIVTGRWFMVFASLLIMSAAGATYMFALYSPDIKDALGYDQTTLNLLSFFKDVGSNVGVLSGLINEVTPPWVVLSMG AVLNFFGYFMIWLAVTKKITGVQVWHMCLYICIGANSQSFANTGSLVTCVKNFPESRGSVLGILKGYVGLSGAIITQFFHAFYGGDTKALILLIGWLPAA ISFAFLRTIRIMKVIRQPNELKVFYNFLYISLALAGFLMIVIILEKTLSFTRGEYGGSAAVVILMLFVPLGVVIVEEYKIWNSKRQALNDPSPLKIVTEK PPPSQEIPAPSPPPPSTSSDKKLVTVESSPSTTDNSNVSCWKTAFRPPDRGEDFTILQALFSVDMLILFLATICGIGGTLTAIDNLGQIGTSLGYPKKSI STFVSLVSIWNYLGRVVSGFGSEHVLKKYKFSRPLLFTLTLLLSCVGHLLIAFNVSGGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYSTLYNFGAAA SPVGLYLLNVRLTGHLYDKEAGKQLAAKGLKRKHGDALDCVGTECFRLSFIIITAATLFGTFVSLILVHRTRKFYKSDIYKKFREAAEEAETEMAVSGNG VGRAETKNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39210			Major facilitator superfamily ...		Potri.008G032901 [exp]	0	1
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	1.41	0.9166
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	1.41	0.9297
					Potri.006G044300 [exp]	6.92	0.8880
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.009G022300 [exp]	13.74	0.8650
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.009G011900 [exp]	14.31	0.8966
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	15.09	0.8956
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	16.00	0.9080
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	16.12	0.8821	RIN4.1
AT5G58950			Protein kinase superfamily pro...		Potri.007G085300 [exp]	18.33	0.8412
AT3G19950			RING/U-box superfamily protein...		Potri.015G028400 [exp]	18.38	0.8770

Compare expression of checked genes

Potri.008G032901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.