Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60650 172 / 3e-52 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT5G04280 171 / 2e-51 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT3G26420 119 / 3e-32 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT2G21660 91 / 2e-22 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G39260 88 / 5e-22 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT5G61030 82 / 7e-18 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT3G23830 78 / 8e-18 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 76 / 7e-17 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G53460 76 / 9e-16 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT4G24770 76 / 1e-15 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228700 [exp] 305 / 1e-104 AT5G04280 172 / 7e-52 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.001G207100 [exp] 111 / 1e-29 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.009G116400 [exp] 91 / 4e-22 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.004G155300 [exp] 89 / 1e-21 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.015G057400 [exp] 77 / 2e-16 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.017G059000 [exp] 73 / 5e-16 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 75 / 9e-16 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.002G222400 [exp] 77 / 1e-15 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 76 / 2e-15 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038683 [exp] 119 / 7e-32 AT5G04280 179 / 8e-55 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10000128 [exp] 116 / 1e-31 AT5G04280 144 / 2e-42 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10037950 [exp] 115 / 4e-30 AT5G04280 186 / 7e-57 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10026344 [exp] 85 / 4e-20 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 85 / 4e-20 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10023569 [exp] 85 / 6e-20 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10040454 [exp] 86 / 9e-20 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10043158 [exp] 82 / 5e-19 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 81 / 9e-19 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10026343 [exp] 81 / 2e-18 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.008G033000.6 pacid=42805738 polypeptide=Potri.008G033000.6.p locus=Potri.008G033000 ID=Potri.008G033000.6.v4.1 annot-version=v4.1 ATGTCTGGAAAGGAAGAGAATCGAATATTTGTTGGAGGTTTGTCATGGGACATCACTGAACGACAGCTCGAAAATGCGTTTGATCGATTTGGAAAAATCG TCGAGTGTCAGGTGATGTTGGAAAGAGATACGGGCCGTCCGCGTGGATTTGGATTTATTACATTTGCGGATCGTCGAGCCATGGACGACGCTATCAGGGA GATGCATGGACGGGACTTTGGTGACCGTGTCATCTCGGTGAACAAGGCCCAACCTAAAATGGGAGGGGATGATTCAGATCATGGCTACAGAGGAGGCTAC TCGACTGGCAGCAGAGGAGGCTATGGGGGAGGAGACAGGCCTGCTGGACAAGATGAGTGCTTCAAGTGTGGGCGTTCAGGGCATTGGGCTAGAGATTGCC CTTCAGCTGGTGCCCGAGGTGGCGGTGGAGGTTTATTATCTTCACGTTCTAGGTTTGGAGGAGCTGGAGATCGTGGGGATCGTTTTGGTGGAGATCGTGA TCGATACATGGATGATCGCTATGATGGAGGACGTTATGGTGACAGGGATCGTTTTGAAAGTAGAGACAAGTATGGGGGGCGTGATCGCTATGCTAGTGAC AGGTACCCACCACCCAATGGAGATCGATTTGCTGGAGATAGGTACAGTGGGTCAGATCGCTATGCACAGAATGGCTATGGCAAAGACAGGGGCTATGATA GGGATGGTGGTCCACGAGGGGGCAATGATAGGTATGGAAGTGGAGGGCCATCACGCAATGATAGGAGCTACAAGAACAGGCCAGGACCTTATGACCGCCC TAGCAGGGGAGGACGCCCATCTTCCTTTGAGCGCTACTAA
AA sequence Show only first row Show all	>Potri.008G033000.6 pacid=42805738 polypeptide=Potri.008G033000.6.p locus=Potri.008G033000 ID=Potri.008G033000.6.v4.1 annot-version=v4.1 MSGKEENRIFVGGLSWDITERQLENAFDRFGKIVECQVMLERDTGRPRGFGFITFADRRAMDDAIREMHGRDFGDRVISVNKAQPKMGGDDSDHGYRGGY STGSRGGYGGGDRPAGQDECFKCGRSGHWARDCPSAGARGGGGGLLSSRSRFGGAGDRGDRFGGDRDRYMDDRYDGGRYGDRDRFESRDKYGGRDRYASD RYPPPNGDRFAGDRYSGSDRYAQNGYGKDRGYDRDGGPRGGNDRYGSGGPSRNDRSYKNRPGPYDRPSRGGRPSSFERY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60650		AtRZ-1b	AtRZ-1b, RNA-binding (RRM/RBD/...		Potri.008G033000 [exp]	0	1
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	1.00	0.7521
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Potri.004G075700 [exp]	2.82	0.7266
AT2G17787			unknown protein		Potri.005G242300 [exp]	4.24	0.7208
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	8.36	0.6842
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	8.48	0.7048
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	13.85	0.6656
AT4G33690			unknown protein		Potri.009G082200 [exp]	19.89	0.5980
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	22.95	0.6238
AT5G51410			LUC7 N_terminus domain-contain...		Potri.001G124300 [exp]	22.97	0.6911
AT2G42240			RNA-binding (RRM/RBD/RNP motif...		Potri.007G046600 [exp]	23.45	0.6072

Compare expression of checked genes

Potri.008G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.