Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 513 / 0 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 422 / 3e-146 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G76990 44 / 0.0001 ACR3 ACT domain repeat 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228500 [exp] 745 / 0 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 557 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 552 / 0 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G237100 [exp] 439 / 5e-153 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 426 / 7e-148 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 416 / 4e-144 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.003G167800 [exp] 52 / 3e-07 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 52 / 4e-07 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.002G074800 [exp] 48 / 8e-06 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017470 [exp] 669 / 0 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 532 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 530 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 424 / 1e-146 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 397 / 2e-136 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 391 / 6e-134 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10028812 [exp] 383 / 1e-132 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10005447 [exp] 324 / 4e-108 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10003136 [exp] 46 / 5e-05 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 45 / 7e-05 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G033200.1 pacid=42806997 polypeptide=Potri.008G033200.1.p locus=Potri.008G033200 ID=Potri.008G033200.1.v4.1 annot-version=v4.1 ATGGGGATATTGCAAGAGGATGTTGTAGTGATTAGTGAAGGAGAGAAGCCTGGAGAATCAACTGAGATTACTGTGAATTGTCCTGATAAAGCTGGACTTG GCTGTGATTTGTGCAGGGTTATCTTGCTTTTTGGATTAAGCATTTGTAAAGGAGATGGACAAACGGATGGGAAATGGTGCTATGTAGTCTTTTGGGTGGT GGGGAAGCCAAGCACAAGGTGGAATTTATTGAAGCAGAGGCTATTAGAGGTGTGTCCATCATATTTTTCAACTTCTGAGATTGACTTCTACAAGCCTGAG AACCAACAGCCAAGGCCGCCAGATGTGTTTCTGTTGAAGTTCTGGTGCTCTTATGACTATGAAGGCCTTTTACACGATGTAACTGAGGTTCTATGTGAGC TGGAGCTGACAATAGAAAGAGTGAAGGTGTCCACTGCTCCGGATGGGAGAGTGATGGACCTCTTTTACATCACTGATACTAGGGAGCTTCTTCGCACAAA AATGAGACAGGAGGAAACAATTCATTATCTGAAGAAGGTGTTAGGGAAGGCTTTGATTAGTTGTGAGATTGAATTAGCTGGGCCAGAGTTTACTGCCTGT TCTCAAGGTTCACCATTTCTTCCTTCTGCAATCACAGAAGACATGTTTAGTTTAGAGCTTCCCAATAATCACCGAAGTGGCTTTCTTGCCCACAATCCTG TCTCTGTTACAGTGGACAATGCCTTCAGTCCCTCACACACACTTGTTAAAATTCTCTGCAAGGATCACAAGGGTCTCATTTATGACATAACAAGAACCCT AAAGGATTATAATATCCAGATTTCCTACGGACGCTTCCTTGCCAGTAGAAAAGGAAACTGTGAAGTGGACTTGTTCTTAATGCAAGCAGATGGCAAGAAG ATAGTTGATCCCAACAAACAAAATGCATTGTGTTCTCGTTTGAGAATGGAGCTTCTGTGTCCTCTTCGACTGGCTGTGGTTAGTCGGGGCCCTGATACTG AGCTGCTTGTTGCAAACCCTGTTGAATTGTCTGGCAGGGGCCGGCCACTTGTCTTCCACGATATTACTCTGGCTCTCAAGAATCTAAACACCCCCATCTT CTCGGTAGAGATAGGGAGGCACATGATTCATGATCGGGAATGGGAAGTGTACAGAATCCTACTTGAAGGTGATGGGTTACCTGTGTCCAGGAACAAGATT GAGGAGGGTGTTAGAAAAGTATTGATGGGTTGGGAATAA
AA sequence Show only first row Show all	>Potri.008G033200.1 pacid=42806997 polypeptide=Potri.008G033200.1.p locus=Potri.008G033200 ID=Potri.008G033200.1.v4.1 annot-version=v4.1 MGILQEDVVVISEGEKPGESTEITVNCPDKAGLGCDLCRVILLFGLSICKGDGQTDGKWCYVVFWVVGKPSTRWNLLKQRLLEVCPSYFSTSEIDFYKPE NQQPRPPDVFLLKFWCSYDYEGLLHDVTEVLCELELTIERVKVSTAPDGRVMDLFYITDTRELLRTKMRQEETIHYLKKVLGKALISCEIELAGPEFTAC SQGSPFLPSAITEDMFSLELPNNHRSGFLAHNPVSVTVDNAFSPSHTLVKILCKDHKGLIYDITRTLKDYNIQISYGRFLASRKGNCEVDLFLMQADGKK IVDPNKQNALCSRLRMELLCPLRLAVVSRGPDTELLVANPVELSGRGRPLVFHDITLALKNLNTPIFSVEIGRHMIHDREWEVYRILLEGDGLPVSRNKI EEGVRKVLMGWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.008G033200 [exp]	0	1
					Potri.008G115533 [exp]	5.47	0.9144
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Potri.002G143400 [exp]	7.61	0.8482
AT3G57450			unknown protein		Potri.012G032500 [exp]	8.48	0.9097
AT1G32930			Galactosyltransferase family p...		Potri.001G450200 [exp]	10.39	0.9057
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	11.48	0.9063	ACO1
AT3G13275			unknown protein		Potri.001G469401 [exp]	12.00	0.9021
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	12.24	0.9061
AT4G17616			Pentatricopeptide repeat (PPR)...		Potri.003G084400 [exp]	12.64	0.7990
AT2G43280	FAR1_related		Far-red impaired responsive (F...		Potri.002G239300 [exp]	12.72	0.7989
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	14.14	0.8983

Compare expression of checked genes

Potri.008G033200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.