Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 800 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 764 / 0 EFR EF-TU receptor (.1) AT3G47090 755 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 734 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 727 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 470 / 2e-149 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 424 / 3e-130 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 398 / 5e-122 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 398 / 4e-120 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 389 / 9e-119 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034000 [exp] 1362 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 1221 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033900 [exp] 1216 / 0 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1198 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 1190 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1171 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 1161 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1149 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 1120 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032306 [exp] 878 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 875 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 873 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 865 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 863 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 848 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 845 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 845 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 842 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 839 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G033700.2 pacid=42806633 polypeptide=Potri.008G033700.2.p locus=Potri.008G033700 ID=Potri.008G033700.2.v4.1 annot-version=v4.1 ATGGAGATGCCAAGCATGGGTTCATGCTTGTTATGGCCACTTATCTTCCAAGTAATTCACCTTTCTTTATCCTCTTCATTACCCATAGGAAATGAGACAG ATAGGCTCTCCCTGCTAGCTTTCAAGGATCAAATCGAAGCCGATCCCCTCGGAACACTAAGCTCATGGAATGATTCCTCGCACTTCTGTGAGTGGTCGGG TGTTACGTGTGGACGCCGGCATCAGCGAGTGGTAGAGCTTGACCTAAATTCATGCAAACTGGTGGGCAGTCTATCTCCCCACATTGGCAACTTGAGTTTT CTCAGGATACTCAACCTGAATAACAACAGTTTCAGCCACACCATCCCTCAAGAAATAGGTCGTTTATTTCGGCTACAGAAGTTGCTCCTTCGGAACAACA CATTCACCGGAGAAATCCCTGTCAACATCTCACGGTGCTCTAATCTATTACACCTTTATTTAGGAGGCAACGAACTTACTGGAGGACTTCCTGGAGAACT TGGATCGTTATCAAAGATGCAGTGGTTTGTATTTGAAATTAATAATCTAGTGGGTGAGATACCAATCTCTTTCGGAAATTTGTCATCCGTAGAGGCGATT TTTGGGGGGGCTAATAATCTGCGAGGAGGTATTCCAAAGAACTTTGGGCAGCTGAAAAGATTAAAAAATCTCGTTTTTAATATAAATAATCTGAGCGGAA CAATTCCACCCTCCATATACAATCTCTCTTCTCTTACTACACTCTCTTTGTCATCTAACCAACTTCATGGAAGTCTTCCTTCTGACTTAGGCCTAACTCT TCCCAATCTCGAAACGCTTGGACTTCACACCAATCACTTTAGCGGGCTCATTCCAGCATCACTGTTCAATGCCTCAAATATTACAGTTATTGATCTTTCA AGCAACAAATTCACCGGGAAAGTGCCAGATCTAGGACACATGCCGAAGCTACGAAGGCTGGTAATTCAAACTAATGATCTTGGAAACAATGAGGACGACG ACCTGGGTTTTCTCTACCCCCTTGCAAACAACACTAATTTGCAAGTATTGGGGATAAATGATAACAATTTAGGAGGGGCGCTGCCAGAAAAAATTAGCAA CTTCTCAATAAAGCTCATACACATGACATTTGGACGAAATCAAATACGTGGAATCATTCCAACTGATATTGGAAACCTCGTCAACCTCCAGACGTTGGGT TTGGAGATGAATCAGTTGACTGGAACTATACCAAGTTCTATCGGTAAACTTCGAAATTTACGTGTTCTGTCTCTTCGTTCAAATAAAATCTCAGGGAGCA TCCCATCTTCTCTGGGAAATTGTACTTCATTGATCAATCTTGAGTTACATGCAAATAATTTAAATGGAAGCATTCCATCAAGTCTTGAAAATTGCCAGAA CTTGTTGTCCTTACTCCTCTCCCGGAATAACTTGAGCGGTCCCATACCGAAAGAACTAATGCGTATTTCATCTTTATCAAGGTATTTAGACCTATCTGAA AATCAGTTGACGGGTTCCCTTCCAATGGAAGTGGATAAGTTGGTGAATCTTGGATATCTCACTGTTTCGTATAACAGGTTATCTGGTGAAATCCCCAGAA CACTTGGAAGCTGTGTGAGTTTGGAATATTTGTATTTGGCTGATAACTCTTTCCATGGGTCCATTCCCGAGTCGTTGAGTTCTTTGAGAGCACTTCAAGT TCTTTATCTCTCCCGCAACAACTTGACAGGAAAAATTCCCAAGTCTTTGGGAGAATTTAAGTTGCTGATAATTTTGGATCTTTCATTTAATGACCTTGAA GGTGAGGTGCCTGTACAAGGGGTCTTTGCTAATGCGAGTGGATTTTCAGTCTTGGGAAACGAGGAGCTTTGTGGAGGAATACCTCAGCTGAATCTGTCCA GATGCACCTCCAAGAAGTCAAAACAGCTGACATCTTCTACCAGGCTGAAATTTATAATTGCAATTCCTTGTGGCTTTGTTGGAATTATCTTGCTTCTCTT ACTTTTCTTTTTCTTGAGAGAAAAGAAAAGTAGGCCAGCTTCAGGCTCCCCATGGGAGAGCACATTTCAGCGAGTAGCCTACGAAGACCTGCTTCAAGCA ACCAACGGGTTCTCCGCTGCCAATTTAATTGGTTCAGGTAGTTTTGGATCTGTGTATAAAGGAATCCTCAAGACAGATGGAGCAGCTGTTGCAACTGTTG CAGTGAAAGTATTCAACCTGCTACGTGAAGGAGCTTCCAAGAGTTTCATGGCGGAATGTGCAGCCTTGGTAAACATCAGGCACCGAAATCTTGTAAAAGT TTTAACAGCATGTTCTGGCTTTGATTTTCAAGGTAATGATTTTAAAGCTCTAGTTTATGAGTTCATGGTGAACGGGAGTCTAGAAGAGTGGTTGCATCCT GTTCGAATATCTGACGAGGCACACAGGCGAAGAGATTTGAGTCTCCTTCAGCGGTTGAACATCGCAATTGACGTGGCTAGTGCACTTGATTATTTGCACA ACCATTGCCAGATTGCCGTTGTTCATTGCGATCTGAAGCCAAGCAATGTCCTTCTGGATGGTGATCTGACTGCTCATGTTGGTGACTTTGGATTAGCAAG GCTCCTCACACAAGCTTCCCATCAGCCCGGTTTGGATCAGACAAGCTCCATTGGTTTAAAAGGCACCATTGGCTATGCAGCCCCAGAGTATGGCATGGGA AGCGAGGTATCGACTTTCGGGGATGTGTACAGCTATGGAATCTTGTTGCTGGAGATGTTTACAGGAAAGAGACCTACAGATACCATGTTTAAAGATGAGA TGAATCTTCACAACTTCGCTAAGATGGCTTCGCCGAATCGCGTGACAGAGATATTGGACCCAGCACTTGTGAGAGAAGCTGAGGAAACAAGTGCTGATCA CGCCTCTACCTCAAGTGCAAGAAACCATAACGGGACTGAGAAAATCATGGAGTGTTTGGTTTTAATTATTAAGGTAGGAGTTGCTTGCGCTGTAGAATCA CCGAGAGAGAGGATAGATATTAGCAATGTTGCAACTGAATTGTATCGGATTAGGAAGATTCTTATTGGAACTGGGAGGCATGGACGCCTCACTTCGTGA
AA sequence Show only first row Show all	>Potri.008G033700.2 pacid=42806633 polypeptide=Potri.008G033700.2.p locus=Potri.008G033700 ID=Potri.008G033700.2.v4.1 annot-version=v4.1 MEMPSMGSCLLWPLIFQVIHLSLSSSLPIGNETDRLSLLAFKDQIEADPLGTLSSWNDSSHFCEWSGVTCGRRHQRVVELDLNSCKLVGSLSPHIGNLSF LRILNLNNNSFSHTIPQEIGRLFRLQKLLLRNNTFTGEIPVNISRCSNLLHLYLGGNELTGGLPGELGSLSKMQWFVFEINNLVGEIPISFGNLSSVEAI FGGANNLRGGIPKNFGQLKRLKNLVFNINNLSGTIPPSIYNLSSLTTLSLSSNQLHGSLPSDLGLTLPNLETLGLHTNHFSGLIPASLFNASNITVIDLS SNKFTGKVPDLGHMPKLRRLVIQTNDLGNNEDDDLGFLYPLANNTNLQVLGINDNNLGGALPEKISNFSIKLIHMTFGRNQIRGIIPTDIGNLVNLQTLG LEMNQLTGTIPSSIGKLRNLRVLSLRSNKISGSIPSSLGNCTSLINLELHANNLNGSIPSSLENCQNLLSLLLSRNNLSGPIPKELMRISSLSRYLDLSE NQLTGSLPMEVDKLVNLGYLTVSYNRLSGEIPRTLGSCVSLEYLYLADNSFHGSIPESLSSLRALQVLYLSRNNLTGKIPKSLGEFKLLIILDLSFNDLE GEVPVQGVFANASGFSVLGNEELCGGIPQLNLSRCTSKKSKQLTSSTRLKFIIAIPCGFVGIILLLLLFFFLREKKSRPASGSPWESTFQRVAYEDLLQA TNGFSAANLIGSGSFGSVYKGILKTDGAAVATVAVKVFNLLREGASKSFMAECAALVNIRHRNLVKVLTACSGFDFQGNDFKALVYEFMVNGSLEEWLHP VRISDEAHRRRDLSLLQRLNIAIDVASALDYLHNHCQIAVVHCDLKPSNVLLDGDLTAHVGDFGLARLLTQASHQPGLDQTSSIGLKGTIGYAAPEYGMG SEVSTFGDVYSYGILLLEMFTGKRPTDTMFKDEMNLHNFAKMASPNRVTEILDPALVREAEETSADHASTSSARNHNGTEKIMECLVLIIKVGVACAVES PRERIDISNVATELYRIRKILIGTGRHGRLTS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033700 [exp]	0	1
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	12.24	0.9529
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	12.96	0.9554	Pt-AO1.3
AT3G02645			Plant protein of unknown funct...		Potri.001G337900 [exp]	17.88	0.9512
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.013G082500 [exp]	24.04	0.8449
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	24.37	0.9484
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G009700 [exp]	26.05	0.9483
AT4G11480		CRK32	cysteine-rich RLK (RECEPTOR-li...		Potri.017G005500 [exp]	26.36	0.9489
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	27.69	0.9380
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003800 [exp]	38.47	0.9431
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	38.88	0.9372

Compare expression of checked genes

Potri.008G033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.