Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 786 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 759 / 0 EFR EF-TU receptor (.1) AT3G47090 723 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 714 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 702 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 464 / 2e-148 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 439 / 1e-138 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 430 / 3e-135 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 428 / 6e-133 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 426 / 3e-131 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034000 [exp] 1397 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 1252 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 1215 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 1172 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1158 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1147 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1144 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 1124 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 1123 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 865 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 858 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 850 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 849 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 844 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 840 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 837 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 834 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 832 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 831 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G033900.3 pacid=42808081 polypeptide=Potri.008G033900.3.p locus=Potri.008G033900 ID=Potri.008G033900.3.v4.1 annot-version=v4.1 ATGATCATGTCTAAAATGGAGATTCCAGGCTTGAGTTCAAACATACTGTATTCACTTTTCTTGCTAATAATTCAATTCTCTATTGCTTCATGTTTACTCG TAGGAAATGAGACTGATAGACTCTCCCTGTTAGCCTTTAAGACTCAAATTAGTGATCCCCTTGGAAAATTGAGCTCATGGAATGAATCCTTACACTTCTG TGAATGGTCAGGAGTTATCTGTGGAAGGAAGCATCGGAGGGTCGTAGAGCTTGACCTGCACTCTTCCCAACTGGCAGGCAGCCTATCTCCCCACATCGGC AACTTGAGTTTTCTCAGGATACTTAACCTGGAAAAAAACAGCTTCAGCTATCTTATTCCACAGGAGCTAGGGCGTTTGTTTCGGATCCAGGAGTTAAGCC TTGGGAACAACACATTCAGCGGTGAAATCCCTGTCAACATCTCGCGCTGCACAAATCTCTTGAGTATTGGATTGGCGAGCAACAATCTCACAGGAAAGCT TCCTGCGGAATTTGGGTCACTGTCAAAGCTACAGGTACTTAATTTCCAACGTAACCATCTGTTTGGTGAGATTCCACCTTCATATGGAAATCTCTCTGAA CTTCAGATAATTCGTGGAGTGCGGAATAATTTGCAAGGAGGTATTCCCGACAGTATTGGGCAACTAAAAAGACTAGCAGACTTTACATTTGGTGTTAATA GTTTGAGTGGTACGATCCCTTCCTCCATATACAATATGTCATCCCTTGTTCGTTTCAGTGCACCACTTAACCAACTTTATGGGATCCTTCCTCCTGAATT AGGCCTAACTCTTCCAAACCTTGATACCTTTAACATTCTCAGCAACCAATTTAGGGGACTAATTCCATCTACCCTATCCAATGCCTCGAAAATTTCTGAT CTTCAACTTAGAAACAACAGCTTCACTGGAAAAGTGCCTTCTTTAGCAGGCCTGCATAATCTACAGAGACTGGTAATTAATTTCAATAACCTTGGAAACA ATGAGGATGATGAGCTGGGCTTTCTCTATCCCCTTGCCAATACTACCAGTTTGGAAATCTTGGCGATAAATCACAACAATTTTGGAGGGGTGCTGCCTGA AATAGTTTGCAACTTCTCCACGAAGCTCAGAATAATGATAATAGGAGAAAATAACCTACGTGGAAGCATTCCAACTGAGATTGGAAAACTCATCGGCCTG GATACTTTGGGCTTGGAGTTGAATCAATTGACTGGCATTATACCAAGTTCTATTGGCAAATTACAGCGTTTGGGTGTTTTTAATATCAATGGAAATAAAA TATCAGGAAACATCCCATCTTCTCTGGGCAATATCACTTCCTTGCTAGAAGTTTATTTCTTTGCAAATAACTTACAAGGTAGAATCCCATCAAGTCTTGG AAATTGCCAAAATTTGTTGATGTTGCGTCTCGATCAAAACAATTTGAGTGGTTCTATACCAAAAGAAGTACTTGGAATTTCATCATTGTCCATGTATTTA GACTTAGCTGAAAATCAGTTGATAGGTCCCCTTCCCTCGGAAGTGGGTAAGCTGGTACATCTTGGAGGTTTGAACGTTTACAAAAACAGGTTATCTGGTG AAATTCCCGGAATTCTTAGCAGTTGTGTGAGTTTGGAGCATTTGAATTTGGGGCCCAACTTTTTCCAAGGGTCCATTCCTGAGTCTTTGAGTTCCTTGAG GGCACTTCAAATTCTCAATCTCTCCCACAACAACTTGAGTGGAAAGATTCCCAAGTTTTTGGCAGAATTTAAGTTGCTGACAAGTTTGGATCTTTCATTT AATAACCTTGAAGGTGAGGTGCCTGTCCAAGGAGTCTTTGCTAGGGCGAGTGGATTTTCAATGTTGGGAAACAAAAAACTTTGTGGAGGAAGGCCTCAGC TGAATCTGTCCAGATGCACATCCAAGAAGTCAAGAAAGCTGAAATCTTCTACCAAGATGAAATTGATAATTGCAATTCCGTGTGGCTTTGTTGGAATTAT CTTGCTCGTCTCTTACATGCTTTTCTTTCTCTTGAAAGAGAAGAAAAGTAGGCCAGCTTCAGGCTCCCCATGGGAGAGCACATTTCAGCGAGTAGCCTAC GAAGACCTGCTTCAAGCAACCAAGGGGTTCTCCCCTGCTAATTTAATTGGTGCGGGTAGTTTTGGATCTGTGTATAAGGGAATCCTCAGATCAGATGGAG CAGCTGTTGCAGTGAAAGTATTCAACCTGCTACGTGAAGGAGCATCCAAGAGTTTCATGGCGGAATGTGCAGCCTTGATAAACATCAGGCACCGAAATCT TGTAAAAGTTTTAACAGCGTGTTCTGGCATTGATTTTCAAGGTAATGACTTTAAAGCTCTAGTTTACGAGTTCATGGTGAACGGGAGTCTAGAAGAGTGG TTGCATCCTGTTCAAATATCTGACGAGGCACACGTGAGAAGAGATTTGAGTCTCCTTCAGCGGTTGAACATCGCAATTGACGTGGCTAGTGCACTCGATT ATTTACACAACCATTGCCAGATTGCCGTTGCTCATTGCGATCTGAAGCCAAGCAATGTCCTTCTTGATGGTGACATGACTGCTCATGTTGGTGACTTTGG ATTAGCAAGGCTCCTCCCACAAGCTTCCCATCAGCTCTGTTTGGATCAGACAAGCTCCATTGGTTTAAAAGGCACCATTGGCTATGCAGCCCCGGAGTAT GGCCTTGGAAGCGAGGTGTCGCCTTATGGGGACGTGTACAGCTATGGCATCCTATTATTGGAGGTGTTTACCGGAAGGAGACCTACTGAATGGCTTGTTT AA
AA sequence Show only first row Show all	>Potri.008G033900.3 pacid=42808081 polypeptide=Potri.008G033900.3.p locus=Potri.008G033900 ID=Potri.008G033900.3.v4.1 annot-version=v4.1 MIMSKMEIPGLSSNILYSLFLLIIQFSIASCLLVGNETDRLSLLAFKTQISDPLGKLSSWNESLHFCEWSGVICGRKHRRVVELDLHSSQLAGSLSPHIG NLSFLRILNLEKNSFSYLIPQELGRLFRIQELSLGNNTFSGEIPVNISRCTNLLSIGLASNNLTGKLPAEFGSLSKLQVLNFQRNHLFGEIPPSYGNLSE LQIIRGVRNNLQGGIPDSIGQLKRLADFTFGVNSLSGTIPSSIYNMSSLVRFSAPLNQLYGILPPELGLTLPNLDTFNILSNQFRGLIPSTLSNASKISD LQLRNNSFTGKVPSLAGLHNLQRLVINFNNLGNNEDDELGFLYPLANTTSLEILAINHNNFGGVLPEIVCNFSTKLRIMIIGENNLRGSIPTEIGKLIGL DTLGLELNQLTGIIPSSIGKLQRLGVFNINGNKISGNIPSSLGNITSLLEVYFFANNLQGRIPSSLGNCQNLLMLRLDQNNLSGSIPKEVLGISSLSMYL DLAENQLIGPLPSEVGKLVHLGGLNVYKNRLSGEIPGILSSCVSLEHLNLGPNFFQGSIPESLSSLRALQILNLSHNNLSGKIPKFLAEFKLLTSLDLSF NNLEGEVPVQGVFARASGFSMLGNKKLCGGRPQLNLSRCTSKKSRKLKSSTKMKLIIAIPCGFVGIILLVSYMLFFLLKEKKSRPASGSPWESTFQRVAY EDLLQATKGFSPANLIGAGSFGSVYKGILRSDGAAVAVKVFNLLREGASKSFMAECAALINIRHRNLVKVLTACSGIDFQGNDFKALVYEFMVNGSLEEW LHPVQISDEAHVRRDLSLLQRLNIAIDVASALDYLHNHCQIAVAHCDLKPSNVLLDGDMTAHVGDFGLARLLPQASHQLCLDQTSSIGLKGTIGYAAPEY GLGSEVSPYGDVYSYGILLLEVFTGRRPTEWLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	0	1
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	1.00	0.8737
AT3G01860			unknown protein		Potri.008G176300 [exp]	2.00	0.8287
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.003G126800 [exp]	2.23	0.8144	TUB10
AT2G07180			Protein kinase superfamily pro...		Potri.006G079600 [exp]	3.46	0.8191
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.013G061800 [exp]	4.24	0.8213	Pt-CIMS.2
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	6.00	0.7958
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	8.94	0.7888
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	12.24	0.7673
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.019G111700 [exp]	14.00	0.7251
AT1G34220			Regulator of Vps4 activity in ...		Potri.013G117100 [exp]	14.49	0.7451

Compare expression of checked genes

Potri.008G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.