Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 827 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 780 / 0 EFR EF-TU receptor (.1) AT3G47090 777 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 773 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 745 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 461 / 5e-146 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 439 / 2e-137 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 436 / 3e-136 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G46330 432 / 2e-133 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 431 / 2e-132 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033900 [exp] 1358 / 0 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 1352 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 1281 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1261 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 1237 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1236 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1206 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 1195 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 1183 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 923 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 920 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 916 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 913 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 912 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 898 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 897 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010199 [exp] 895 / 0 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 893 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030846 [exp] 889 / 0 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G034000.5 pacid=42807877 polypeptide=Potri.008G034000.5.p locus=Potri.008G034000 ID=Potri.008G034000.5.v4.1 annot-version=v4.1 ATGGAGCTGCCAGGAATGAGTTCATGCATATTGTGGCTGCTTTTTTTGCAAATAATACAACTCCCCATTCCTTTCTCATTACCTACGGGAGGAAACGAGA CAGATAGACTGTCCCTGCTTGCTCTTAAGAGTCAAATTACAAACGATCCCTTTGGTATGCTGAGCTCCTGGAATGAATCCTTGCACTTCTGCGATTGGTC AGGAGTTATATGTGGAAAGAGGCATCGGAGAGTCGTAGAGATTGACCTACACTCTGCCCAACTGGTGGGCAGCCTATCTCCACACATTGGCAACTTGAGT TTTCTCAGGATACTGAAACTGGAAAACAACAGGTTCAGCCATAACATCCCACAGGAACTGGGTCATTTGTTTCGCCTACGGATGCTGAGCCTTGAGAACA ATACATTCGATGGCAAAATCCCAGTCAACATTTCGCATTGCTCAAACCTCTTGATCCTCTCTTTGTCGGGCAATAATCTTACTGGCAAACTTCCTATAGA ACTTGGATCGTTATCAAAGCTGCAGGTTTTTTTTTTTCAATTTAACTATCTGGTTGGCGGGATACCATCTTCTTTTGGAAATTTATCAGCTATTATACAA ATTTTTGGGGCGGGGAATTATTTGCAAGGAGGAATCCCCAATAGCATTGGCCAATTGAAAAGTTTAAAATCGTTCTCTTTTGGTCGAAATAATATGACTG GTATGATCCCTCCCTCTATATACAATCTTTCTTCTCTCATGCGATTTGCGGTGCCAGTGAACCAACTTCATGGGAATCTTCCTCCTGACTTAGGCCTAAC TCTTCCAAACCTTGAAATTCTTCTAATGTCTTTCAACCGTTTCAGTGGGTCAATTCCACCAACGTTCTCCAATGCCTCGACTATTGCTGTTATTGAACTC TCAAACAACAATCTCACTGGGAGAGTTCCCGATTTATCAAGCCTGAGTAAGCTGCGATGGCTGATAGTTGATGTAAATTATCTTGGAAATGGTAATGATG ATGACCTAAGTTTTCTCCCTCCCCTGGCAAACAAGACCAGTTTGGAAGAATTGTCTATAAATGATAACAATTTCGGAGGGTTGCTGCCTAAAATAATTAG CAACTTCTCAGAAAACCTGAAGAGAATGACATTCGGAAGAAACCAAATACGTGGAAGTATTCCAAGTGGTATAGGAAATCTCATTGGCCTGGATACTTTG GGTTTGGAGATGAATCAGTTGACTGGTGTTATTCCAAATTCTATTGGTAAATTACAAAACTTGGGTGTACTGGCTCTTGGTGGAAACAAAATCTCAGGGA ACATTCCATCTTCTATGGGCAATATCACTTCCTTGCTCGAAGTTTATTTATCTGCAAATAACTTACAAGGTAGAATCCCATCAAGTCTTGGAAATTGCCA AAATTTGTTGATATTGCATCTTGATCAAAACAATTTGAGTGGCTCCATACCAAAAGAAGTAATTAGTATTCCATCCTCATCAAGAATTTTAGTTCTATCT GAAAACCAGTTGACAGGTTCCCTTCCCCTGGAAGTGGGTAAGTTGGCGAATCTTGGATATTTCAATCTTTCTCATAACAGGTTATCTGGTGAGATCCCCA GAACACTTGGAAGCTGTGTGAGTTTGGAGTTTTTGTATATGGAGGGGAATCTTTTCCAAGGGCCGATTCCTGAGTCTTTGAGTTCCTTGAGGGCCCTTCA AATTCTCAATCTCTCCCACAACAACTTGAGTGGAGAGATTCCCAAGTTTTTGGCAGAATTGAAGTTGCTGACAAGTTTGGATCTTTCATTTAATAACCTT GAAGGTGAGGTACCTGTCCAAGGAATCTTTGCTAGGGCCAGTGGATTTTCAATGTTGGGAAACAAAAAACTTTGTGGAGGAATGCCTCAGCTGAATCTGT CCAGATGCACATCCAAGAAGTCAAGAAAGCTGAAATCTTCTACCAAGCTGAAATTGATAATTGCAATTCCTTGTGGCTTTGTTGGAATTATCTTGGTCGT CTCTTACATGCTTTTCTTTTTCTTGAAAGAGAAGAAAAGTAGGCCAGCTTCAGGCTCCCCATGGGAGAGCACATTTCAGCGAGTAGCCTACGAAGACCTG CTTCAAGCAACCAATGGGTTCTCCCCTGCTAATTTAATTGGTGCGGGTAGTTTTGGATCCGTGTATAAGGGAATCCTCAGATCAGATGGAGCAGCTGTTG CAGTGAAAGTATTCAACCTGCTACGTGAAGGAGCATCCAAGAGTTTCATGGCGGAATGTGCAGCCTTGATAAACATCAGGCACCGAAATCTTGTAAAAGT TTTAACAGCGTGTTCTGGCATTGATTTTCAAGGTAATGATTTTAAAGCTCTAGTTTACGAGTTCATGGTGAACGGGAGTCTAGAAGAGTGGTTGCATCCA GCTCAAATATCTGACGAGGCACACAGGCGAAGAGATTTGAGTCTCCTTCAGCGGTTGAACATCGCAATTGACGTGGCTAGTGCACTCGATTATTTGCACA ACCATTGCCAGATTGCTATTGTTCATTGCGATCTGAAGCCAAGCAATGTCCTTCTTGATGGTGACTTGACTGCTCATGTTGGTGACTTTGGATTAGCAAG GCTCCTCCCACAAGCTTCCCATCAGCTCTGTTTGGATCAGACAAGCTCCATTGGTTTAAAAGGCACCATTGGCTATGCAGCCCCGGAGTATGGCCTTGGA AGCGAGGTGTCGCCTTATGGGGACGTGTACAGCTATGGCATCCTATTATTGGAGGTGTTTACCGGAAGGAGACCTACGGATGGCTTGTTTAAAGACGGGC TGAACCTTCATAACTTTGCTAAAACGGCTTTGCCAATCTCTGTGGCCGAAGTGTTGGACCCAGTACTTGTAACAGAAGCTGAGGAAACGAGCGGCGATGC CTCTCGTAGGATGAGCCATATTGGAAATCATATGGAGTGTCTTGCTGCTATTGTCAAGGTTGGAGTTGCTTGTTCTGCAGAATTCCCAAGAGAACGCATG GAAATTAGCAGTGTTGCAGTTGAACTGCGTCGAATCAGGCACATTCTTCTGGGACCTCAGACTCATGGGAAGCGCTAA
AA sequence Show only first row Show all	>Potri.008G034000.5 pacid=42807877 polypeptide=Potri.008G034000.5.p locus=Potri.008G034000 ID=Potri.008G034000.5.v4.1 annot-version=v4.1 MELPGMSSCILWLLFLQIIQLPIPFSLPTGGNETDRLSLLALKSQITNDPFGMLSSWNESLHFCDWSGVICGKRHRRVVEIDLHSAQLVGSLSPHIGNLS FLRILKLENNRFSHNIPQELGHLFRLRMLSLENNTFDGKIPVNISHCSNLLILSLSGNNLTGKLPIELGSLSKLQVFFFQFNYLVGGIPSSFGNLSAIIQ IFGAGNYLQGGIPNSIGQLKSLKSFSFGRNNMTGMIPPSIYNLSSLMRFAVPVNQLHGNLPPDLGLTLPNLEILLMSFNRFSGSIPPTFSNASTIAVIEL SNNNLTGRVPDLSSLSKLRWLIVDVNYLGNGNDDDLSFLPPLANKTSLEELSINDNNFGGLLPKIISNFSENLKRMTFGRNQIRGSIPSGIGNLIGLDTL GLEMNQLTGVIPNSIGKLQNLGVLALGGNKISGNIPSSMGNITSLLEVYLSANNLQGRIPSSLGNCQNLLILHLDQNNLSGSIPKEVISIPSSSRILVLS ENQLTGSLPLEVGKLANLGYFNLSHNRLSGEIPRTLGSCVSLEFLYMEGNLFQGPIPESLSSLRALQILNLSHNNLSGEIPKFLAELKLLTSLDLSFNNL EGEVPVQGIFARASGFSMLGNKKLCGGMPQLNLSRCTSKKSRKLKSSTKLKLIIAIPCGFVGIILVVSYMLFFFLKEKKSRPASGSPWESTFQRVAYEDL LQATNGFSPANLIGAGSFGSVYKGILRSDGAAVAVKVFNLLREGASKSFMAECAALINIRHRNLVKVLTACSGIDFQGNDFKALVYEFMVNGSLEEWLHP AQISDEAHRRRDLSLLQRLNIAIDVASALDYLHNHCQIAIVHCDLKPSNVLLDGDLTAHVGDFGLARLLPQASHQLCLDQTSSIGLKGTIGYAAPEYGLG SEVSPYGDVYSYGILLLEVFTGRRPTDGLFKDGLNLHNFAKTALPISVAEVLDPVLVTEAEETSGDASRRMSHIGNHMECLAAIVKVGVACSAEFPRERM EISSVAVELRRIRHILLGPQTHGKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G034000 [exp]	0	1
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	3.31	0.9109
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	6.92	0.8961	Pt-KT2.2
AT3G26700			Protein kinase superfamily pro...		Potri.014G144800 [exp]	8.30	0.8346
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	8.36	0.9105
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	10.39	0.8950
AT1G06660		JASON	JASON, unknown protein		Potri.005G205700 [exp]	10.58	0.8936
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Potri.016G134500 [exp]	11.22	0.8986
AT5G03120			unknown protein		Potri.016G087000 [exp]	12.60	0.8499
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	15.87	0.8901	CAld5H/F5H4,Pt-FAH1.4
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	16.30	0.8856

Compare expression of checked genes

Potri.008G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.