Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 270 / 3e-86 HXXXD-type acyl-transferase family protein (.1) AT4G15390 228 / 5e-70 HXXXD-type acyl-transferase family protein (.1) AT3G30280 222 / 2e-67 HXXXD-type acyl-transferase family protein (.1) AT5G47950 219 / 2e-66 HXXXD-type acyl-transferase family protein (.1) AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) AT1G24420 213 / 3e-64 HXXXD-type acyl-transferase family protein (.1) AT5G23970 197 / 2e-58 HXXXD-type acyl-transferase family protein (.1) AT5G47980 185 / 2e-53 HXXXD-type acyl-transferase family protein (.1) AT4G15400 161 / 1e-44 HXXXD-type acyl-transferase family protein (.1) AT3G48720 128 / 1e-32 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034200 [exp] 682 / 0 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 680 / 0 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 677 / 0 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 356 / 3e-119 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 356 / 3e-119 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 349 / 1e-116 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 348 / 3e-116 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 344 / 1e-114 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 344 / 1e-114 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037956 [exp] 478 / 4e-167 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 474 / 6e-166 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 410 / 2e-140 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 404 / 5e-138 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 361 / 3e-121 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 354 / 2e-118 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 295 / 3e-95 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 293 / 1e-94 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 286 / 4e-92 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 285 / 8e-92 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.008G034100.1 pacid=42807906 polypeptide=Potri.008G034100.1.p locus=Potri.008G034100 ID=Potri.008G034100.1.v4.1 annot-version=v4.1 ATGAAGATGGAAGTTCACATCGTTTCAAGAGAAGTCATCAAACCATCTTCACCAACAGTTCAGCATAAGAAACCCTACAAACTCTCCCTTTTTGATCAGC TCACTCCCACAACTTATTCAACAGTTATTTTCTTCTACCAGATGTACGGTATCAATGCCGATGATATCACAAGAACCAGAATTGATCACTGCAAGAAATC TCTCTCAGAGACCCTCAATATCTTCTACCCTTTATCTGGAAGGGTAAGGGGTAACCTTTTCATTGATTCTTTCAATGAAGGTGTTCCGTACATTGAAGCC CAAGTTAATTGCCGCTTGTCCGATTTCTTGAAACACAATGAAATTGAGTCGTTGAATCGCTTACTTCCATGTCAACCCTATATCAAGGAAGATATGGAAG CACCTCTAGTAGCACTTCAAATGAACGTGTTTACTTGTGGAGGAATGGCAGTAGCCGGTGCGGCTTCGCACAAGATCGTGGATGGAGCAACAAGCAAGGC TCTCTTCTCGACCTGGGCATCTATATCTCGAGGAGATTGCAATAATATTAAACAACCTGATCTTGAACAGGCATCACTCTTTTTTCCACCAAGAAATTCA ATTCCACAGAACCATTTATCTCTAATGGAAACCTTGTGGTTCACAGGAGGAAATTATATTACAAGAAGATTTGTATTTAGTGCCAAAGCGATAGCCACGT TAAGGGCTATGGCCACAGCTGGCAAGCCTGACGCAAAGACATCAAGAATTCAAGCGTTGACGTGTTTCATTTGGAAATCTTTTATGGCTGCTTCAAGGGC AATATCAGGTTCACCAAAACCATCCATTTTGGTTGAAGCAGTCGATCTCCGGTCTCGAACAAAGCCACCCATGTCTTATGATTCCCCTGGGAATGCCTTT TGGTGGGCAACCGCGCTTGTTAACCCCATGGGAACAAAGACAGAGTTGCCTGAATTAGCGGACATATTGAATGGGGTCACTGCACTCTTTGATAGTGATT ACACAGAAACTCTACAAGGTGAAGATGGGTTTGAAACAATGACTGAATACTGTAACCAGCTCGAAGAGTTATTTTCTCTCGAAAAGCCGGATATATTTGC GTTTACTTGTTGGTCTTATTTTGGTTTCACTCAGACCAACTTTGGATGGGGAGAGCCCATTTGGGTTGGTCTCATGGGAAAAGTTGGCCCTGCATTCAGA AATCTCACTGTTCTTATTGAAACCAGAGATAGAAAAGGGATCGAGGCATGGGTCACCTTAGATGAGGAAAGAATGACTCTGCTGGAACGTGATCCTGAGT TCCTGGCTTTTGCATCTCCAGATCCCAAGATTTCAAGCCTGTGA
AA sequence Show only first row Show all	>Potri.008G034100.1 pacid=42807906 polypeptide=Potri.008G034100.1.p locus=Potri.008G034100 ID=Potri.008G034100.1.v4.1 annot-version=v4.1 MKMEVHIVSREVIKPSSPTVQHKKPYKLSLFDQLTPTTYSTVIFFYQMYGINADDITRTRIDHCKKSLSETLNIFYPLSGRVRGNLFIDSFNEGVPYIEA QVNCRLSDFLKHNEIESLNRLLPCQPYIKEDMEAPLVALQMNVFTCGGMAVAGAASHKIVDGATSKALFSTWASISRGDCNNIKQPDLEQASLFFPPRNS IPQNHLSLMETLWFTGGNYITRRFVFSAKAIATLRAMATAGKPDAKTSRIQALTCFIWKSFMAASRAISGSPKPSILVEAVDLRSRTKPPMSYDSPGNAF WWATALVNPMGTKTELPELADILNGVTALFDSDYTETLQGEDGFETMTEYCNQLEELFSLEKPDIFAFTCWSYFGFTQTNFGWGEPIWVGLMGKVGPAFR NLTVLIETRDRKGIEAWVTLDEERMTLLERDPEFLAFASPDPKISSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034100 [exp]	0	1
					Potri.007G016532 [exp]	1.00	0.9918
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008300 [exp]	1.41	0.9916
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Potri.014G126900 [exp]	1.73	0.9893	Pt-PCEL20.2
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.006G166800 [exp]	2.00	0.9848
AT5G19730			Pectin lyase-like superfamily ...		Potri.014G117100 [exp]	3.16	0.9811
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Potri.010G167500 [exp]	4.89	0.9803
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.003G053000 [exp]	5.09	0.9527
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	7.34	0.9609
AT1G31710			Copper amine oxidase family pr...		Potri.010G089050 [exp]	7.34	0.9728
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G017500 [exp]	9.21	0.9612	Pt-PGI.1

Compare expression of checked genes

Potri.008G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.