Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 280 / 5e-90 HXXXD-type acyl-transferase family protein (.1) AT4G15390 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) AT1G24430 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) AT3G30280 245 / 3e-76 HXXXD-type acyl-transferase family protein (.1) AT1G24420 241 / 7e-75 HXXXD-type acyl-transferase family protein (.1) AT5G47950 236 / 4e-73 HXXXD-type acyl-transferase family protein (.1) AT5G23970 206 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT5G47980 198 / 1e-58 HXXXD-type acyl-transferase family protein (.1) AT4G15400 177 / 1e-50 HXXXD-type acyl-transferase family protein (.1) AT3G48720 122 / 1e-30 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 887 / 0 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 680 / 0 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 671 / 0 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 381 / 3e-129 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 381 / 3e-129 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 380 / 1e-128 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 380 / 1e-128 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 380 / 1e-128 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 378 / 5e-128 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037956 [exp] 513 / 0 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 511 / 2e-180 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 446 / 2e-154 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 444 / 6e-154 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 383 / 1e-129 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 369 / 2e-124 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 313 / 9e-103 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 313 / 9e-103 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 306 / 6e-100 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 289 / 3e-93 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.008G034300.2 pacid=42808531 polypeptide=Potri.008G034300.2.p locus=Potri.008G034300 ID=Potri.008G034300.2.v4.1 annot-version=v4.1 ATGGCGAAGATAGAAGTTCACATCATTTCAAAAGAACTCATCAAACCATCTTCCCCAGCAATTCAGCAGAAAAAACCCTACGAACTCACCCTTTTTGATC AGCTCACTCCCACAACTTATTCCCCAGCTATCTTCTTCTACCCCATGAACGATGTCAATTTCAACAATATTACTGCCAAAACCAGAATTGATAGCTTAAA GAAATCTCTCTCAGAGACCCTTAACCTCTACTACCCCTTTTCTGGAAGGGTTAAAGATAATCTCTTCATTGATTGTTTCAGTGAAGGGGTCCCATTCCTT GAAGCCCAAGTTAATTGTCGCTTGTCTGATTACCTTAAACACAATGAAATTGAGTCACTGAACCTTTTCCTTCCATGCCACCCCTTTGCAAAGGAAAACA TGAGTGCACCTATATCAGCTTTTCAAGTGAGCATATTTGCATGTGGAGGAATATCACTTGGCTGGTCTGCTTCACATAAGCTCGTTGATGGGGGAACAGC CAAGGCTTTCCTTTCAGCTTGGGCATCTAAATCTCGAGGAGAACATACTGAGGCTATACAGCCTGATTTCAGTAAGGCGTCACTCTTTTTTCCACCAAGA AATCCACTTCCACGGAACCATATATCACTAATGGAAACCTTGTGGTTCACGGAAGCAAATTACATTACAAGAAGGTTTGTCTTTGATCCCAAAGCGATAG CAATGTTAAGGGCTAAGGCCAAAGCTGGCAAGCCGGACACCAAGCCATCAAGAACGGAGACATTGTCATGTTTCATTTGGAAATGCTGTATGGCTGCTTC AAAGGCAATATCAGATTCACCAAAGCCATCCATTATGGTCGAAGCAGTGAATCTCCGGTCGCGTACGAAGCCACCCATGTCCGAAGCTTCCATTGGGAAT ATCTTTTGGTGGGCAACTGCTGTTGCAAACCCCACAGACACAAACACAGAACTGCATGAATTGGTAAACCAGTTGAATGAAGCTATTGCACTGTATGATA GTGATTATACACGAACTATGCAAGGTGAAGAAGGGTTTGAAACCATGTCTGATTACTGCAGCCAGCTAGAAGGGTTATTCTCTCTTGAAAAGCCAGATAT ATTTGCTTTTACTTGTTGGTGTTATCTTGGTTTAACCAAGGCAAACTTTGGATGGGGAGAGCCCTTGTGGGTTGGTCTCATGGGCAAAGTTGGCCCTGCA TTCAGAAATCTCACTGTACTTGTCGAAACCAAAGATGGTAACGGGATTGAGGCATGGGTCACGTTAGATGAGGAACGAATGGCTGTACTGGAACGTGATC CTGAATTTTTGGCATTTGCTTCTCCAAATCCTAAGTTTTCAAGCCTTTGA
AA sequence Show only first row Show all	>Potri.008G034300.2 pacid=42808531 polypeptide=Potri.008G034300.2.p locus=Potri.008G034300 ID=Potri.008G034300.2.v4.1 annot-version=v4.1 MAKIEVHIISKELIKPSSPAIQQKKPYELTLFDQLTPTTYSPAIFFYPMNDVNFNNITAKTRIDSLKKSLSETLNLYYPFSGRVKDNLFIDCFSEGVPFL EAQVNCRLSDYLKHNEIESLNLFLPCHPFAKENMSAPISAFQVSIFACGGISLGWSASHKLVDGGTAKAFLSAWASKSRGEHTEAIQPDFSKASLFFPPR NPLPRNHISLMETLWFTEANYITRRFVFDPKAIAMLRAKAKAGKPDTKPSRTETLSCFIWKCCMAASKAISDSPKPSIMVEAVNLRSRTKPPMSEASIGN IFWWATAVANPTDTNTELHELVNQLNEAIALYDSDYTRTMQGEEGFETMSDYCSQLEGLFSLEKPDIFAFTCWCYLGLTKANFGWGEPLWVGLMGKVGPA FRNLTVLVETKDGNGIEAWVTLDEERMAVLERDPEFLAFASPNPKFSSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034300 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	2.23	0.8746
AT4G39830			Cupredoxin superfamily protein...		Potri.010G171700 [exp]	2.82	0.8193
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.015G074600 [exp]	5.65	0.8111
AT2G27240			Aluminium activated malate tra...		Potri.001G217050 [exp]	13.63	0.8124
AT1G66480		PMI2	plastid movement impaired 2 (....		Potri.017G128800 [exp]	14.83	0.7597
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.011G053400 [exp]	17.23	0.7222
AT5G03820			GDSL-like Lipase/Acylhydrolase...		Potri.006G118300 [exp]	26.98	0.7754
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Potri.001G461000 [exp]	29.59	0.6543
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	33.76	0.7087
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	36.46	0.6827	Pt-TKI1.2

Compare expression of checked genes

Potri.008G034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.