Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 132 / 7e-37 HXXXD-type acyl-transferase family protein (.1) AT4G15390 116 / 4e-31 HXXXD-type acyl-transferase family protein (.1) AT5G47950 107 / 7e-28 HXXXD-type acyl-transferase family protein (.1) AT3G30280 103 / 2e-26 HXXXD-type acyl-transferase family protein (.1) AT1G24430 102 / 9e-26 HXXXD-type acyl-transferase family protein (.1) AT1G24420 94 / 8e-23 HXXXD-type acyl-transferase family protein (.1) AT5G23970 85 / 9e-20 HXXXD-type acyl-transferase family protein (.1) AT5G47980 82 / 1e-18 HXXXD-type acyl-transferase family protein (.1) AT2G19070 61 / 4e-11 SHT spermidine hydroxycinnamoyl transferase (.1) AT4G15400 61 / 5e-11 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 196 / 6e-61 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 192 / 6e-60 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 185 / 3e-57 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 174 / 6e-53 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 167 / 3e-50 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 167 / 3e-50 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 167 / 3e-50 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 167 / 3e-50 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 167 / 4e-50 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017468 [exp] 162 / 4e-48 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 159 / 7e-47 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10037952 [exp] 145 / 3e-43 AT1G24430 130 / 5e-35 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 142 / 2e-40 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 137 / 1e-38 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 133 / 3e-37 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 128 / 2e-35 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 126 / 1e-34 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 125 / 2e-34 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 125 / 3e-34 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.008G034401.1 pacid=42806820 polypeptide=Potri.008G034401.1.p locus=Potri.008G034401 ID=Potri.008G034401.1.v4.1 annot-version=v4.1 ATGGTGAAGATAGAAGTTCACGTCATTTCAAGGGAAATCATCAAGCCATCTTCACCAACAATTCACAATCTACAGCCCTACAAACTCTGCCTTCTTGACC AGCTCACTCCCACATCTTATGCTCCCATGATGCTTTTCTACCCCAAGAGTAATGAAGCAAATATGGATGACACCCAATTCCTGAAACACCTCAAAAGGTC ACTCTCTGATACAGTACTGAATGTTCTCTACCCATTTTCTGGTAGGGTAAAAACCAATATGTTCGTTGATCGTTTTGATGAAGGTGTTTCATTTATGGAA GCCCGGGTTAATTGTAGTCTGTCCGAATTTTTTGAAGACCCGCAAATTGAATCTTTAAATCAGTTCCTTCCATGCCCACCTCTCGCCAAAGAATCACAAG ATGACGTGACCCTGTTGATTTTTCAGCTGAGCGTATTTTCTTGTGGTGGATTAGCACTTGATGGGTGCATGTCACACAAGCTTGGTGATGGAGGAACTGC TTCCACCCTCTTCAGTGCATAG
AA sequence Show only first row Show all	>Potri.008G034401.1 pacid=42806820 polypeptide=Potri.008G034401.1.p locus=Potri.008G034401 ID=Potri.008G034401.1.v4.1 annot-version=v4.1 MVKIEVHVISREIIKPSSPTIHNLQPYKLCLLDQLTPTSYAPMMLFYPKSNEANMDDTQFLKHLKRSLSDTVLNVLYPFSGRVKTNMFVDRFDEGVSFME ARVNCSLSEFFEDPQIESLNQFLPCPPLAKESQDDVTLLIFQLSVFSCGGLALDGCMSHKLGDGGTASTLFSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034401 [exp]	0	1
AT2G01660		PDLP6	plasmodesmata-located protein ...		Potri.010G108100 [exp]	18.76	0.8193
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Potri.001G126000 [exp]	42.66	0.7231
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	65.58	0.7586
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	82.99	0.7254	Pt-RAN1.4
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.009G160200 [exp]	171.55	0.7165
AT5G57830			Protein of unknown function, D...		Potri.018G103500 [exp]	200.73	0.6893
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.005G110600 [exp]	209.53	0.6884
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017601 [exp]	216.43	0.6889
AT3G24515		UBC37	ubiquitin-conjugating enzyme 3...		Potri.006G157600 [exp]	246.18	0.6796
AT4G29680			Alkaline-phosphatase-like fami...		Potri.006G150900 [exp]	260.48	0.6803

Compare expression of checked genes

Potri.008G034401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.