Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67410 557 / 0 Exostosin family protein (.1) AT3G45400 314 / 7e-103 exostosin family protein (.1) AT1G74680 307 / 2e-100 Exostosin family protein (.1) AT2G35100 275 / 4e-88 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT3G03650 275 / 3e-87 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT5G44930 243 / 2e-75 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G34270 226 / 8e-69 Exostosin family protein (.1) AT5G16890 218 / 3e-65 Exostosin family protein (.1) AT3G07620 96 / 2e-21 Exostosin family protein (.1) AT3G42180 86 / 4e-18 Exostosin family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067400 [exp] 313 / 4e-102 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 304 / 1e-98 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 296 / 1e-95 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 260 / 8e-82 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 257 / 1e-80 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 226 / 1e-68 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 223 / 7e-68 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 212 / 3e-63 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 105 / 8e-28 AT3G45400 145 / 5e-43 exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015791 [exp] 590 / 0 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 590 / 0 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 306 / 1e-99 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 306 / 3e-99 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 300 / 4e-97 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 296 / 1e-94 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10013627 [exp] 280 / 3e-91 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10036219 [exp] 278 / 1e-87 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10038355 [exp] 273 / 2e-87 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10024214 [exp] 270 / 5e-86 AT1G74680 468 / 3e-163 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.008G034500.1 pacid=42808358 polypeptide=Potri.008G034500.1.p locus=Potri.008G034500 ID=Potri.008G034500.1.v4.1 annot-version=v4.1 ATGTATGGAAAAGCAATTGTCTCACTAGCATTCATAATCCTTCTCTTAATCTCTTTCTCCCTCTTCATCGGCACTGTTGATATCAGATCATACTTTTTTG CATCACCAGATGGAGCCCACAACTTACCCTGTACGCCCACCCACACGCAATCCTCTCCTTCTGTTCCTCTCAAAGTGTACATGTATGATCTTCCACGTCG ATTCAACATCGGAATGATGCAGTGGAAGAAGGGGGGTGGAGATGACACGCCGGTGAGGACAGCGGAGGAGTTGCCGCGGTGGCCGGTGAATGTGGGGGTG AGGAAGCAACATAGTGTGGAGTATTGGCTAATGGCTTCGCTTTTGGGAAGTGGTGGAGAGGGAGAGGAGAGGGAGGCTGTTAGGGTTTTGGATCCTGAGA TTGCGGAAGCGTATTTTGTGCCGTTTTTTAGTTCGTTGAGTTTTAATACTCATGGGCGTAACATGACTGATCCTGAAACAGAAAAGGATCGGCAATTGCA GGTTGATTTAATAGACTTTTTGCAAAAGTCAAAGTACTGGCAGAGGTCTGGAGGCAGAGACCATGTGATTCCAATGACACATCCAAATGCTTTTAGATTT CTCCGACAACTGGTGAATGCGTCCATTCTTATTGTTGCAGACTTTGGCCGCTACCCTAAATCCTTGTCAACTCTAAGTAAAGATGTTGTGTCGCCGTATG TACACAATGTGGATTCCTTTAAAGATGATGACCTATTGGACCCATTTGAATCTCGAAAGACACTTCTTTTCTTCAGGGGGAATACAGTCAGGAAAGATAA AGGAAAAGTTCGTGCCAAACTTGAAAAGATATTGGCTGGTTATGATGATGTTCGGTATGAACGAAGCTCGCCTACAGCTGAAGCAATACAAGCGTCAACT CAAGGGATGCGGTCATCGAAGTTCTGCCTGCATCCTGCAGGAGACACTCCTTCCTCTTGCCGGCTTTTCGATGCTATTGTTAGCCACTGTGTTCCGGTCA TTGTGAGTGATCTAATTGAGCTCCCTTATGAAGATGAAATTGACTACAGCCAATTCTCAATTTTCTTCTCTATAAACGAGGCTATTCAGCCAGATTACTT GGTTAATCAGCTCCGGAGATTTCCAAAGGACAGGTGGATTGAAATGTGGAGGCAGCTCAAGAAGATCTCTCATCACTTTGAATTCCAATACCCCCCAGTG AAGGAAGATGCAGTCAACTTGCTATGGAGGCAGGTTAAGAACAAGCTTCCAGGAGCCCAACTTGCTGTCCATAGAAATCACAGATTGAAAGTCCCAGACT GGTGGCAGCGGAGAAGATGA
AA sequence Show only first row Show all	>Potri.008G034500.1 pacid=42808358 polypeptide=Potri.008G034500.1.p locus=Potri.008G034500 ID=Potri.008G034500.1.v4.1 annot-version=v4.1 MYGKAIVSLAFIILLLISFSLFIGTVDIRSYFFASPDGAHNLPCTPTHTQSSPSVPLKVYMYDLPRRFNIGMMQWKKGGGDDTPVRTAEELPRWPVNVGV RKQHSVEYWLMASLLGSGGEGEEREAVRVLDPEIAEAYFVPFFSSLSFNTHGRNMTDPETEKDRQLQVDLIDFLQKSKYWQRSGGRDHVIPMTHPNAFRF LRQLVNASILIVADFGRYPKSLSTLSKDVVSPYVHNVDSFKDDDLLDPFESRKTLLFFRGNTVRKDKGKVRAKLEKILAGYDDVRYERSSPTAEAIQAST QGMRSSKFCLHPAGDTPSSCRLFDAIVSHCVPVIVSDLIELPYEDEIDYSQFSIFFSINEAIQPDYLVNQLRRFPKDRWIEMWRQLKKISHHFEFQYPPV KEDAVNLLWRQVKNKLPGAQLAVHRNHRLKVPDWWQRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	0	1
AT3G56250			unknown protein		Potri.013G083700 [exp]	1.41	0.9331
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	2.00	0.9192	SAUR5
AT2G27060			Leucine-rich repeat protein ki...		Potri.009G159101 [exp]	2.44	0.9123
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133300 [exp]	6.32	0.8719	PCBERp4
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.007G116300 [exp]	6.63	0.8873
AT3G23090			TPX2 (targeting protein for Xk...		Potri.008G162800 [exp]	6.70	0.8956
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G118100 [exp]	6.92	0.8772
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G257300 [exp]	8.83	0.8457
AT5G57830			Protein of unknown function, D...		Potri.006G181300 [exp]	8.94	0.8911
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	9.16	0.8923

Compare expression of checked genes

Potri.008G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.