Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54880 120 / 8e-37 unknown protein AT5G03440 103 / 2e-30 unknown protein AT5G25360 91 / 2e-24 unknown protein AT4G32342 84 / 1e-21 unknown protein AT3G15770 78 / 2e-19 unknown protein AT1G15350 73 / 4e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227800 [exp] 196 / 1e-66 AT3G54880 123 / 7e-38 unknown protein Potri.018G027800 [exp] 100 / 2e-27 AT5G25360 182 / 1e-58 unknown protein Potri.006G254000 [exp] 98 / 6e-27 AT5G25360 197 / 3e-65 unknown protein Potri.001G192700 [exp] 91 / 1e-24 AT5G25360 169 / 1e-54 unknown protein Potri.006G068600 [exp] 87 / 1e-22 AT5G25360 194 / 9e-64 unknown protein Potri.018G130900 [exp] 72 / 4e-17 AT5G25360 140 / 8e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013824 [exp] 111 / 6e-33 AT3G54880 108 / 1e-31 unknown protein Lus10026537 [exp] 100 / 8e-29 AT5G03440 97 / 5e-28 unknown protein Lus10038690 [exp] 87 / 7e-23 AT3G54880 81 / 1e-20 unknown protein Lus10037957 [exp] 81 / 1e-20 AT3G54880 73 / 1e-17 unknown protein Lus10002164 [exp] 81 / 4e-20 AT5G25360 174 / 3e-56 unknown protein Lus10005466 [exp] 65 / 5e-15 AT5G25360 99 / 6e-28 unknown protein Lus10030101 [exp] 63 / 1e-14 AT5G25360 79 / 2e-20 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13259 [poplar] [flax] DUF4050 Protein of unknown function (DUF4050)
Representative CDS sequence Show only first row Show all	>Potri.008G034600.1 pacid=42808269 polypeptide=Potri.008G034600.1.p locus=Potri.008G034600 ID=Potri.008G034600.1.v4.1 annot-version=v4.1 ATGGAGGTAAATTCTGTAAGCTCCCACTCCAATGAGAAGCGATCATCAGAGCATTCCACATCCACCAATGGAGAACATATGAACACAGAAAAAGAGAAGA GTACATCTGTATTTGTTAATCATGCTGCAATTGCATGGCACGAGAGCAGAAGAAAGTGGACAGGAAATCAATCTCGTCAGCCACAGAGAACGACCAAGGA CCCAATTATAAGCTGGTCAACAACCTATGAAGATTTGCTTTCTACTCAGGAGCCCTTCTCTGAGCCAATTCCTTTATCTGAGATGGTAGATTTTTTAGTT GATATTTGGCATGATGAAGGCCTCTTTGATTAA
AA sequence Show only first row Show all	>Potri.008G034600.1 pacid=42808269 polypeptide=Potri.008G034600.1.p locus=Potri.008G034600 ID=Potri.008G034600.1.v4.1 annot-version=v4.1 MEVNSVSSHSNEKRSSEHSTSTNGEHMNTEKEKSTSVFVNHAAIAWHESRRKWTGNQSRQPQRTTKDPIISWSTTYEDLLSTQEPFSEPIPLSEMVDFLV DIWHDEGLFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54880			unknown protein		Potri.008G034600 [exp]	0	1
AT4G17960			unknown protein		Potri.003G090600 [exp]	3.31	0.8762
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	12.80	0.8550	Pt-CPK7.2,CPK14
AT4G10810			unknown protein		Potri.001G087200 [exp]	18.24	0.8402
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.015G012500 [exp]	20.78	0.8495
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.001G269900 [exp]	25.09	0.8170
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	26.26	0.8448
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.004G176300 [exp]	27.16	0.7862	PIP2.1
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.003G141100 [exp]	27.60	0.8504
AT2G25280			unknown protein		Potri.018G023700 [exp]	30.24	0.7969
AT3G18860			transducin family protein / WD...		Potri.004G150700 [exp]	32.61	0.7888

Compare expression of checked genes

Potri.008G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.