Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10410 734 / 0 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 685 / 0 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 600 / 0 SCPL47 serine carboxypeptidase-like 47 (.1) AT5G22960 209 / 7e-65 alpha/beta-Hydrolases superfamily protein (.1) AT1G15000 192 / 1e-55 SCPL50 serine carboxypeptidase-like 50 (.1) AT1G73300 174 / 1e-48 SCPL2 serine carboxypeptidase-like 2 (.1) AT3G25420 170 / 9e-47 SCPL21 serine carboxypeptidase-like 21 (.1) AT3G10450 168 / 2e-46 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT2G23010 167 / 3e-46 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT2G22920 166 / 8e-46 SCPL12 serine carboxypeptidase-like 12 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227700 [exp] 927 / 0 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 671 / 0 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.005G060100 [exp] 207 / 6e-61 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129800 [exp] 186 / 3e-53 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 180 / 5e-51 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.009G006701 [exp] 165 / 4e-49 AT3G45010 171 / 7e-52 serine carboxypeptidase-like 48 (.1) Potri.012G105500 [exp] 167 / 5e-46 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 163 / 2e-44 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 163 / 2e-44 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037958 [exp] 799 / 0 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 775 / 0 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 754 / 0 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 605 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10041338 [exp] 418 / 2e-143 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 413 / 4e-141 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 205 / 7e-64 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10042334 [exp] 199 / 7e-58 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 196 / 1e-56 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 186 / 4e-53 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.008G034800.1 pacid=42806103 polypeptide=Potri.008G034800.1.p locus=Potri.008G034800 ID=Potri.008G034800.1.v4.1 annot-version=v4.1 ATGGAGAACCTTAATTTCATTTCTCTCCTTCTCCTCTCACTTATCGCGATATCTCACGCGAGTTTATCAGACAATGCTTATCTCAGTCTCGGGAAGTCAA ATTTCCCGTCTGTGCAAGCAGAGAAGCTGATAAGGGAGCTGAATTTGTTTCCAAATTCAGAAGTCAACGTGATCGATGGTGGTGATGATGGTGTTAGTTT TATTGACCAAGCAGGGTATAATAAGAGGATTGTAGAGAGGAAATTTAGGTTTCCTAATGTAGTTGGTGATGAGGAAGAAAGCTTTACTGTTGATGATCTG GGAAATCATGCTGGTTATTACAAGATTGAGAATTCTCATGATGCTAGGATGTTTTACTTTTTCTTTGAATCAAGGACCAGCAAGAAGGATCCTGTGGTCA TTTGGTTGACTGGAGGACCAGGGTGTAGTAGTGAATTGGCTATGTTTTATGAAAATGGTCCATATACTATTGCAAATAACTTGTCGCTTGTGCGAAATAA GTACGGATGGGACAAGGTGTCAAACCTTCTATATGTTGACCAACCTACTGGGACTGGATACAGTTATAGTACTGATAGGCGTGACATCCGTCACAATGAA GAGGGAGTTAGTAATGATCTATATGACTTCTTACAGGCCTTCTTCAAGGAGCATCCTGAATTGGCAAAGAATGACTTCTACATAACTGGAGAATCATATG CTGGCCACTATATTCCTGCTTTTGCAGCCCGAGTCCACAGAGGAAACAAAGCTAAAGAAGGAATTCATATAAACCTCAAGGGATTCGCCATTGGTAATGG GCTCACTGACCCTGCAATCCAGTATAAAGCATACACAGATTATGCGTTGGATATGGGAATAATTAAACAAGCTGAGCATGATCGCATCAGCAAGATAGTT CCAGTGTGTGAAATGGCAATAAAGCTTTGTGGCACTGATGGTACAGTCTCTTGCATGGCCTCCTATTTAGTTTGCAGCACCATATTCAACAGCATTATAT CAGTTGCTGGTAATATAAATTATTATGACATAAGAAAGAATTGCGAGGGGAGCCTCTGCTATGACTTCTCAAATATGGAGAAATTTCTGGGCCAGAAATC TGTTAAGGAGGCACTTGGTGTTGGGGATATAGACTTTGTTTCCTGTAGCCCTACAGTCTACCAGGCGATGCTGATGGACTGGATGAGAAATCTTGAAGTG GGCATTCCTGCTCTCCTTGAGGATGGAATCAAGTTGCTTGTGTATGCTGGAGAATATGATCTCATCTGCAACTGGCTTGGTAATTCAAGATGGGTTCATG CCATGGAATGGCCTGGTCAGAAGGCGTTTGTGGCATCTCCTGAAGTTCCTTTCGAAGTTAGTGGTTCTGAAGCTGGAGTACTGAAAAGTTATGGGCCTCT CGCATTCCTTAAGGTCCATGATGCCGGGCACATGGTTCCCATGGACCAGCCCGAGGCTTCATTAGAGATGCTGAAGAGGTGGACTCGGGGCACATTGTCA GAAGCCACAGAGGAGCCCCAACAATTGGTTGCTGAGATTTGA
AA sequence Show only first row Show all	>Potri.008G034800.1 pacid=42806103 polypeptide=Potri.008G034800.1.p locus=Potri.008G034800 ID=Potri.008G034800.1.v4.1 annot-version=v4.1 MENLNFISLLLLSLIAISHASLSDNAYLSLGKSNFPSVQAEKLIRELNLFPNSEVNVIDGGDDGVSFIDQAGYNKRIVERKFRFPNVVGDEEESFTVDDL GNHAGYYKIENSHDARMFYFFFESRTSKKDPVVIWLTGGPGCSSELAMFYENGPYTIANNLSLVRNKYGWDKVSNLLYVDQPTGTGYSYSTDRRDIRHNE EGVSNDLYDFLQAFFKEHPELAKNDFYITGESYAGHYIPAFAARVHRGNKAKEGIHINLKGFAIGNGLTDPAIQYKAYTDYALDMGIIKQAEHDRISKIV PVCEMAIKLCGTDGTVSCMASYLVCSTIFNSIISVAGNINYYDIRKNCEGSLCYDFSNMEKFLGQKSVKEALGVGDIDFVSCSPTVYQAMLMDWMRNLEV GIPALLEDGIKLLVYAGEYDLICNWLGNSRWVHAMEWPGQKAFVASPEVPFEVSGSEAGVLKSYGPLAFLKVHDAGHMVPMDQPEASLEMLKRWTRGTLS EATEEPQQLVAEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.008G034800 [exp]	0	1
AT3G61660			unknown protein		Potri.014G095600 [exp]	1.00	0.9023
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.019G130700 [exp]	4.00	0.8932	C4H1,Pt-CYP73.3
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.007G081000 [exp]	4.24	0.8951	SK3
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G156200 [exp]	5.29	0.8878
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.003G117000 [exp]	5.29	0.8610	Pt-PAK.1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.003G114100 [exp]	5.47	0.8880	MYB85.1
AT2G36210			SAUR-like auxin-responsive pro...		Potri.006G211000 [exp]	6.00	0.8647
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	6.70	0.8794
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.011G007600 [exp]	7.07	0.8061
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	7.48	0.8957

Compare expression of checked genes

Potri.008G034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.