Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54870 342 / 8e-112 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT1G12430 291 / 1e-92 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT1G01950 288 / 2e-91 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT3G63480 134 / 2e-36 ATP binding microtubule motor family protein (.1.2) AT3G44730 133 / 3e-35 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 127 / 2e-33 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G19050 127 / 3e-33 POK2 phragmoplast orienting kinesin 2 (.1) AT3G45850 127 / 3e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G36200 126 / 6e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 125 / 1e-32 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227000 [exp] 432 / 9e-145 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.003G117000 [exp] 295 / 5e-94 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.014G070900 [exp] 294 / 7e-94 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.002G149400 [exp] 282 / 4e-89 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.001G115100 [exp] 281 / 9e-89 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.011G165200 [exp] 140 / 7e-38 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G467600 [exp] 139 / 2e-37 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.006G082900 [exp] 130 / 3e-34 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G021100 [exp] 130 / 3e-34 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038696 [exp] 351 / 4e-114 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 350 / 4e-113 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038007 [exp] 291 / 2e-92 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10009241 [exp] 290 / 2e-92 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10006670 [exp] 283 / 7e-90 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10007014 [exp] 284 / 1e-89 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10032897 [exp] 131 / 1e-34 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10018049 [exp] 128 / 1e-33 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10024429 [exp] 127 / 3e-33 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10042045 [exp] 127 / 3e-33 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.008G035400.5 pacid=42808086 polypeptide=Potri.008G035400.5.p locus=Potri.008G035400 ID=Potri.008G035400.5.v4.1 annot-version=v4.1 ATGGCTTACGGTCAAACAGGTACCGGAAAAACTTATACGGTTGGGAAACTGGGCAAAGATGATGCGGCGGAGCGTGGTATTATGGTCAGAGCTCTTGAGG ATGTACTTGCTAGTACGATGCCTGGTTCTGATGTTGTGGAGGTCTCCTATTTGCACTTGTATATGGAATCTATACAAGACTTGCTTGCACCAGAAAAGGC TAGTATCCCTATTAATGAGGATGCAAGGACTGGGGAAGTATCATTGCCTGATGTCTCAGTAGTTAAGGTTCAAGATCTCAATCATTTTTCAGATCTGCTA CAAATTGGCGAGACAAACCGTCATGCTGCTAATACAAAGCAGAATACTGAATCTTCCCGAAGTCATGCAATTCTAATGGTTCATGTACGGAGATCCATAA ATCAAAAGGCAGGAGATGAAACCGCTTCTCAAGAGAAAGATGTGAAAAGTAATTTAGCTGGTGGCAATGGGTTACCTAGAGTACGGAAAAGCAAGTTGCT GGTTGTGGATCTTGCTGGATCTGAAAGATTAGACAAATCTGGCAGTGAAGGTCACTTGCTCGAAGAGGCTAAGTTTATCAATCTCTCTCTTACTTCCCTT GGCAAATGTATAAATGCACAGGCAGAAAACAGTCCACATATACCCACAAGGGATTCTAAGTTAACCAGATTGTTGCGTGATTCATTTGGAGTTTCTACAG CAGGAAAATATTCGTCTAGGGTTGGAGATGCAAGACATCGCAAATGA
AA sequence Show only first row Show all	>Potri.008G035400.5 pacid=42808086 polypeptide=Potri.008G035400.5.p locus=Potri.008G035400 ID=Potri.008G035400.5.v4.1 annot-version=v4.1 MAYGQTGTGKTYTVGKLGKDDAAERGIMVRALEDVLASTMPGSDVVEVSYLHLYMESIQDLLAPEKASIPINEDARTGEVSLPDVSVVKVQDLNHFSDLL QIGETNRHAANTKQNTESSRSHAILMVHVRRSINQKAGDETASQEKDVKSNLAGGNGLPRVRKSKLLVVDLAGSERLDKSGSEGHLLEEAKFINLSLTSL GKCINAQAENSPHIPTRDSKLTRLLRDSFGVSTAGKYSSRVGDARHRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54870		AtKINUc, CAE1, ...	MORPHOGENESIS OF ROOT HAIR 2, ...		Potri.008G035400 [exp]	0	1
AT2G47710			Adenine nucleotide alpha hydro...		Potri.008G221300 [exp]	3.74	0.8609
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Potri.001G043200 [exp]	5.74	0.8268
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.017G115350 [exp]	8.48	0.7570
					Potri.006G267450 [exp]	11.83	0.8119
AT5G01960			RING/U-box superfamily protein...		Potri.019G132201 [exp]	13.49	0.7552
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.002G155400 [exp]	32.74	0.7906
AT1G20670			DNA-binding bromodomain-contai...		Potri.019G132601 [exp]	34.74	0.7394
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098000 [exp]	37.46	0.7675
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	40.24	0.7293
AT5G07820			Plant calmodulin-binding prote...		Potri.012G067100 [exp]	41.15	0.7643

Compare expression of checked genes

Potri.008G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.