Plant FIBer expression Database

Potri.008G035500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39140 480 / 2e-169 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
AT3G43340 101 / 2e-26 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G226901
[exp]
49 / 1e-07 AT2G39140 61 / 1e-12 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
Potri.010G226801
[exp]
0 / 1 AT2G39140 0 / 1 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037966
[exp]
463 / 6e-163 AT2G39140 469 / 3e-165 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
Lus10038697
[exp]
430 / 2e-143 AT5G55840 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
CL0492 S4 PF01479 S4 S4 domain
Representative CDS sequence
>Potri.008G035500.1 pacid=42807310 polypeptide=Potri.008G035500.1.p locus=Potri.008G035500 ID=Potri.008G035500.1.v4.1 annot-version=v4.1
ATGGCAGCATCGCTATCCACTCTCCATCTTCACCACCAACTCACCTTCTTCAGAAAACCCTCACTCTCCCTCCTCAACAAGTCCATCCGTCCCACACGCA
TCACCGCTTCTCTAGAATTCAACATCACCTTCGCCCCTCCTAAACCCAAACCCAAACTCCCTGCCAACCTCCAAACCGACGCCGCATCCCTCTCTCTCCC
TCCAGGCCAGCTCTTCATTCCCTGGATAGTCCGCGGAGAAGATGGAAACCTCAAGCTCCAATCTAACCCTCCCGCGCGTCTCATCCACGCTATCGCCGAT
GCCAAAACACAACCAAAGAAAAAGAAAGACAAGGTGAAGAAAGAGAGTAGTGGAAATGTGAAGGCCAAGTTGGAAGCGGAGCCTACGCGGTCTAAGGCGG
CGCGTAGGTTCTATAATGAGAATTTTAGAGACCAAGCGCAGCGGTTGAGTAAAGTTCTAGCCGCTGCCGGAGTGGCGTCGAGGAGGAGCAGTGAAGCGTT
GATTTTTGAAGGCAAAGTGACTGTTAATGGTTCTGTGTGCAATACTCCACAGACTCGAGTTGATCCCGGGAGGGATTCTATTTATGTTAATGGAAATCGG
CTTCCCAAGAAACTGCCCCCGAAAATCTATATTGCTCTCAATAAGCCAAAAGGGTACATTTGCTCGTTGGGGGAGAAAGAGTCTAAGTCTGTAATGTGCT
TATTGGATGATTATTTTCAGAGTTGGGATAAAAGAAATCCAGGATTACCTAAGCCACGGCTATTTACTGTTGGACGACTTGATGTTGCCACAACTGGGTT
GATTATCGTGACCAATGATGGGGACTTTGCCCAACAAATTGCACATCCATCGTCAAATTTATCGAAGGAATATATTGCAACAGTTGATGGTGTAGTAAGC
AAGCGACATTTGTTTGCCGTCAGCGAAGGAACAGTCATTGAAGGTGTCCGTTGCGTCCCAGACTCTGTGGAGTTGTTACCACAACAACCAGATAGACCAA
GACCTCGTCTTCGAATTGTGGTTCATGAAGGGAGGAACCATGAGGTCCGAGAACTAGTAAAAAATGCTGGGCTCGAGATTCATTCATTGAAACGTGTCCG
CATTGGTGGTTTCAGACTCCCATCAGACCTCGGGCTTGGGAAGCATGCTGAGCTAAAACAAACTGATCTGAAGACTCTGGGATGGAAATGTTAA
AA sequence
>Potri.008G035500.1 pacid=42807310 polypeptide=Potri.008G035500.1.p locus=Potri.008G035500 ID=Potri.008G035500.1.v4.1 annot-version=v4.1
MAASLSTLHLHHQLTFFRKPSLSLLNKSIRPTRITASLEFNITFAPPKPKPKLPANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIAD
AKTQPKKKKDKVKKESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDSIYVNGNR
LPKKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVS
KRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLGWKC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39140 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, P... Potri.008G035500
[exp]
0 1
AT5G04810 pentatricopeptide (PPR) repeat... Potri.008G017400
[exp]
1.73 0.9718
AT4G29750 CRS1 / YhbY (CRM) domain-conta... Potri.006G148901
[exp]
2.00 0.9772
AT4G10000 Thioredoxin family protein (.1... Potri.013G102000
[exp]
3.46 0.9715
AT1G27510 Protein of unknown function (D... Potri.015G075000
[exp]
6.70 0.9652
AT2G21710 EMB2219 embryo defective 2219, Mitocho... Potri.009G116200
[exp]
8.12 0.9576
AT3G59040 Tetratricopeptide repeat (TPR)... Potri.001G220300
[exp]
8.83 0.9648
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.013G103600
[exp]
10.24 0.9513
AT5G17790 VAR3 VARIEGATED 3, zinc finger (Ran... Potri.013G067200
[exp]
12.64 0.9588
AT3G01370 ATCFM2 Arabidopsis thaliana CRM famil... Potri.001G350801
[exp]
12.96 0.9503
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.001G015400
[exp]
13.00 0.9547

Potri.008G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.