Plant FIBer expression Database

Pt-VPS33.2 (Potri.008G035600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-VPS33.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54860 968 / 0 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
AT1G77140 52 / 1e-06 ATVPS45, VPS45 vacuolar protein sorting 45 (.1)
AT4G12120 46 / 9e-05 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G226600
[exp]
1132 / 0 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Potri.002G071600
[exp]
56 / 9e-08 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1)
Potri.005G188000
[exp]
55 / 1e-07 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1)
Potri.004G204400
[exp]
49 / 8e-06 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Potri.014G069300
[exp]
43 / 0.0005 AT1G02010 945 / 0.0 secretory 1A (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038698
[exp]
721 / 0 AT3G54860 654 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Lus10037969
[exp]
712 / 0 AT3G54860 650 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Lus10007300
[exp]
190 / 3e-55 AT3G54860 179 / 1e-51 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Lus10002776
[exp]
111 / 1e-27 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Lus10018921
[exp]
47 / 5e-05 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1)
Lus10028622
[exp]
46 / 8e-05 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1)
Lus10023936
[exp]
46 / 0.0001 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Lus10014435
[exp]
44 / 0.0005 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00995 Sec1 Sec1 family
Representative CDS sequence
>Potri.008G035600.4 pacid=42808527 polypeptide=Potri.008G035600.4.p locus=Potri.008G035600 ID=Potri.008G035600.4.v4.1 annot-version=v4.1
ATGGCTCAAATCCCTAACTTAGACAACTCTCCTCTCAATCTTAAATCCTTCAGGGAACAATCTCAGAAAGATCTCGTTGACATCCTCAAGAACATTCGAG
GAAAGAAGTGTTTAGTGATTGATCCAAAGCTTAGTGGATCAATTTCGCTGATCATCCAGACAACAATTCTTAGGGAAAATGGTGCTGAATTGCGGCATCT
TTCAGCGGAACCAGTTCAGACTGATTGTACTAAAGTGGTTTACCTTGTTCGTTCAGAGTTCAGTCTGATGAGATTCATATGTTCCAATATTCATCATGAC
ACGTCACAAGGACTCCAGAGGGAGTACTATGTTTATTTTGTGCCTCGTCGTGAGGTTGTTTGTGAGAAGGTCCTTGAGGAGGAAAATGTTCATAACTTGG
TGACAATCGGGGAGTACCCATTATACATGGTTCCATTGGATGAGGATGTACTATCATTTGAACTTGACTTAGCTAACAAAGAATGCCTAGTTGATGGTAA
TACAAGTTCACTCTGGCATATTGCAAAGGCCATTCACAAGCTTGAGTCTTCTTTTGGAGTGATACCAAATGTGAGAGCAAAAGGTAAAGCATCAGTACGC
ATTGCTGACATTCTCAATCGCATGCAAGCAGAAGAACCAGTTAACTCATCCGATATGGTTATGCCAGAAATAAATACTCTCATTCTTATAGACAGGGAGG
TGGACATGGTTACTCCTATGTGCTCTCAATTAACATATGAAGGACTTCTGGACGAGTTTCTGCACATCAACAATGGTGCCATGGAGCTTGATTCATCAAT
CATGGGTGATCAACAAGAAGGAAAAAAGATGAAAGTTTCACTTAATTCAAGTGACAAGCTGTTCAAGGAAATTCGAGATCTCAACTTTGAAGTTGTTGTC
CAGGTCCTTCGTCAAAAAGCAACATCTATGAAGCAGGACTACACAGATATGACAACTACTCACCAGACAGTTTCTGAGTTAAAGGATTTTGTTAAAAAGC
TGAATTCATTGCCGGAGATGACTAGACACATAAATCTGGCTCAGCATCTGTCAACATTCACATCAAAGCATTCATTTCAGTCACGACTTGACATGGAGCA
GACACTTGTTGAGGCTCAGAGTTATGACATATGCTATGATTACATTGAAGAATTAATCCATAAGCAGGAGCCTCTAGTTACTGTCGTGCGTCTTCTGATC
TTATTTTCCATCACAAATTCAGGGCTTCCAAAAAAGAATTTTGATCATTTGAGGAGGGAGCTGCTTCATAGCTATGGATTTGAGCACATAGCAATGTTGA
ATAATTTAGAGAAGGCTGGATTGCTTAAAAAGCAGGAAAGTAAAGGCAACTGGCTGACAATCAAACGTAATCTCCAGCTTGTAACTGAGGATACTGACAC
TACCAACCCCAACGACATTGCATATGTCTTTTCTGGATATGCACCACTTAGCATCCGCCTTGTCCAGCATGCTGTTCGATCTGGATGGCGTCCCATGGAA
GAAACTTTGAAGCTGTTGCCAGGACCTCATTCAGAAATGAAGAGAGGTGGATTCTCAAGCAGTTCTTCGTTTGACACTTTGCATGGGGCTTCAGCAGCTG
TTGACAGAGTTGCTGATGGAAGACGCTCCCTGGTACTTGTTGTTTTCATTGGAGGGGTAACATTTGCAGAAATTTCTGCACTTCGATTTCTCAGTGCTCA
GGAAGCGATGGCATATGATATGATTATTGGGACAACAAAAATCGTCAACGGTAACACCTTGACCCAGACATACATGGAAAAGTTGGGTTAA
AA sequence
>Potri.008G035600.4 pacid=42808527 polypeptide=Potri.008G035600.4.p locus=Potri.008G035600 ID=Potri.008G035600.4.v4.1 annot-version=v4.1
MAQIPNLDNSPLNLKSFREQSQKDLVDILKNIRGKKCLVIDPKLSGSISLIIQTTILRENGAELRHLSAEPVQTDCTKVVYLVRSEFSLMRFICSNIHHD
TSQGLQREYYVYFVPRREVVCEKVLEEENVHNLVTIGEYPLYMVPLDEDVLSFELDLANKECLVDGNTSSLWHIAKAIHKLESSFGVIPNVRAKGKASVR
IADILNRMQAEEPVNSSDMVMPEINTLILIDREVDMVTPMCSQLTYEGLLDEFLHINNGAMELDSSIMGDQQEGKKMKVSLNSSDKLFKEIRDLNFEVVV
QVLRQKATSMKQDYTDMTTTHQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKHSFQSRLDMEQTLVEAQSYDICYDYIEELIHKQEPLVTVVRLLI
LFSITNSGLPKKNFDHLRRELLHSYGFEHIAMLNNLEKAGLLKKQESKGNWLTIKRNLQLVTEDTDTTNPNDIAYVFSGYAPLSIRLVQHAVRSGWRPME
ETLKLLPGPHSEMKRGGFSSSSSFDTLHGASAAVDRVADGRRSLVLVVFIGGVTFAEISALRFLSAQEAMAYDMIIGTTKIVNGNTLTQTYMEKLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Potri.008G035600
[exp]
0 1 Pt-VPS33.2
AT4G31150 endonuclease V family protein ... Potri.018G001000
[exp]
1.73 0.9070
AT1G49340 ATPI4K ALPHA, A... Phosphatidylinositol 3- and 4-... Potri.009G113700
[exp]
2.00 0.9085 Pt-ALPHA.12
AT3G52120 SWAP (Suppressor-of-White-APri... Potri.009G064600
[exp]
2.23 0.9089
AT5G07630 lipid transporters (.1) Potri.001G126200
[exp]
2.82 0.9051
AT1G47550 SEC3A exocyst complex component sec3... Potri.002G131400
[exp]
2.82 0.8999
AT3G04490 unknown protein Potri.019G019100
[exp]
3.16 0.8978
AT2G38840 Guanylate-binding family prote... Potri.005G217300
[exp]
3.87 0.9026
AT5G04420 Galactose oxidase/kelch repeat... Potri.008G031200
[exp]
4.47 0.8885
AT2G34710 HD ATHB14, PHB-1D,... PHABULOSA 1D, PHABULOSA, ARABI... Potri.001G372300
[exp]
5.29 0.8945 PHB.2
AT5G11800 ATKEA6, KEA6 K+ efflux antiporter 6, ARABID... Potri.018G054100
[exp]
6.00 0.8948 ATKEA4.2

Potri.008G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.