Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54850 821 / 0 ATPUB14 plant U-box 14 (.1) AT3G46510 665 / 0 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 560 / 0 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 459 / 3e-154 PUB15 Plant U-Box 15 (.1) AT1G71020 444 / 1e-148 ARM repeat superfamily protein (.1.2) AT1G23030 434 / 5e-145 PUB11 ARM repeat superfamily protein (.1) AT1G29340 273 / 7e-82 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 258 / 3e-79 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT2G23140 256 / 8e-75 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G01830 242 / 6e-71 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226500 [exp] 1108 / 0 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 707 / 0 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 700 / 0 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 497 / 4e-169 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 473 / 8e-160 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 462 / 3e-155 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.008G128600 [exp] 450 / 8e-151 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.004G205000 [exp] 436 / 1e-145 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G071600 [exp] 357 / 4e-114 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037970 [exp] 924 / 0 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 685 / 0 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 684 / 0 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10038699 [exp] 543 / 0 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10012260 [exp] 465 / 2e-156 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 456 / 5e-153 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10043471 [exp] 452 / 2e-151 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 433 / 5e-134 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 370 / 2e-119 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10033249 [exp] 356 / 2e-119 AT3G54850 340 / 3e-113 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.008G035700.1 pacid=42806083 polypeptide=Potri.008G035700.1.p locus=Potri.008G035700 ID=Potri.008G035700.1.v4.1 annot-version=v4.1 ATGTCATTAACGGGAGATCCGAGTTCTGAGTTGCTGAGTCGACTCGTTGACTCAGTGAAAGAGATTTCTGGGTTACCGGAGTGTAGAAATGTTTTTAAAA AGACGCATGGCGATTTGGTACGTAGGATTAAGCTATTGAGCCCTATGTTTGAGGAATTGAAGGATAATAATGAAGAGCTAAGTGAAGAAGAGACTAAAGG ATTTGAATTATTGAGAACCGTTTTAGATTCTGCTAAGGAACTTCTCAAATCGGTTGTTGAAGGAAGCAAGGTGTATCAGACTTTGCAAAGGGACGACATA GCAGATAAGATCAACCAGATTACAGAAAAAATTGAAGCAGCATTGGGTGAGATTCCTTACGACAAACTCAATTTATCAGAGGAAGTTCAAGAACAGATTG AACTTGTGCACGCTCAATTCAGAAGAGCAAAGGGAAGGCAAGAACTCCAAGATCATCAACTGGAAGTTGATTTGGCCATAGCACAGAGAGAAAAGGATCC TGACCGTGCAATACTAAAAAGACTTTCAGAAAAGTTGCATCTCCAGACTATCGATGATCTAAAGAAAGAATCCCTTGCTTTCCATGAACTGGTTATTGCA AGTGGTGGAGATCCAGGAGACTGGTTCAAGAAGATGGCATCCCTCTTTAAGAAGTTAAAGGACTATGTTCAAACAGAAAACCCTGAAATTGATTCTGCTG AGGCTGGAAAGGGTATGATTAAACACAGATCTCCTGTTATCCCAGATGATTTTCGGTGCCCAATATCTCTTGAACTGATGAAAGATCCTGTTATTGTCTC TACCGGACAGACATATGAAAGATCCTGCATCCAAAAATGGCTAGATGCAGGCCATAAGACATGTCCAAAAACGCAGCAGACCCTTTTGCATACTGCGCTT ACACCGAACTATGTTTTGAAGAGTTTGATTGCTTTATGGTGTGAGAGCAATGGAGTAGAGCTTCCTAAACAGCCAGGGGCTTGTAGAAGCAAAAAAGTAG GAAGCAGCATGTCAGATTGTGACCGAGCTGCAGTCACTACCTTATTAGACAAATTAGGCAATGGTAGTCTGGAACAACAAAGATCAGCTGCTGGAGAGCT TCGTTTATTAGCAAAGAGGAATGCGGATAACAGAGTCTGCATTGCTGAAGCAGGAGCAGTTCCACTCCTTGTGGAGCTATTATCCTCAACAGATCCTCGA ACCCAAGAGCATGCTGTTACAGCGCTTCTCAACCTTTCCATAAATGACCTTAACAAGGGAACCATTGTTAATGCGGGAGCCATTCCTGATATAGTTGATG TTTTAAAAAATGGAAGCATGGAGGCCAGGGAAAATGCAGCCGCAACTCTTTTCAGTTTGTCTGTGATAGATGAGAATAAGGTGGCAATAGGGGCAGCTGG GGCAATCCCAGCTCTTATAAAGTTGCTTTGTGATGGGACTCCAAGAGGAAAGAAGGATGCTGCTACTGCTATCTTTAATCTTTCAATTTATCAGGGAAAC AAGGCTAGGGCTGTAAAGGCTGGTATTGTGCCACCCCTGATGAGGTTGTTGAGGGATGCTGGGGGAGGAATGGTGGATGAAGCACTGGCAATTCTTGCCA TCCTTGCAGGTCATCAAGAAGGGAAGGTAGCAATTGGTCAGGTTGACCCGATTCCTGTTCTGATAGAGGTCATCAGGACTGGATCTCAACGCAACCGAGA GAATGCTGTAGCAATCTTGTGGTCGCTTTGCACTGGTGATTCACAGCAGTTGATCTTAGCTAAGCAGTTTGGTGCTGAAGAGGCACTAAAGGAGCTCTCG GAGAGCGGTACTGACAGGGCCAAGAGAAAGGCTGGAAGCATATTAGAGCTCCTCCAACGAGCTGATACTGTGGTTGATCAAAGCTGA
AA sequence Show only first row Show all	>Potri.008G035700.1 pacid=42806083 polypeptide=Potri.008G035700.1.p locus=Potri.008G035700 ID=Potri.008G035700.1.v4.1 annot-version=v4.1 MSLTGDPSSELLSRLVDSVKEISGLPECRNVFKKTHGDLVRRIKLLSPMFEELKDNNEELSEEETKGFELLRTVLDSAKELLKSVVEGSKVYQTLQRDDI ADKINQITEKIEAALGEIPYDKLNLSEEVQEQIELVHAQFRRAKGRQELQDHQLEVDLAIAQREKDPDRAILKRLSEKLHLQTIDDLKKESLAFHELVIA SGGDPGDWFKKMASLFKKLKDYVQTENPEIDSAEAGKGMIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL TPNYVLKSLIALWCESNGVELPKQPGACRSKKVGSSMSDCDRAAVTTLLDKLGNGSLEQQRSAAGELRLLAKRNADNRVCIAEAGAVPLLVELLSSTDPR TQEHAVTALLNLSINDLNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIKLLCDGTPRGKKDAATAIFNLSIYQGN KARAVKAGIVPPLMRLLRDAGGGMVDEALAILAILAGHQEGKVAIGQVDPIPVLIEVIRTGSQRNRENAVAILWSLCTGDSQQLILAKQFGAEEALKELS ESGTDRAKRKAGSILELLQRADTVVDQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.008G035700 [exp]	0	1
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	1.41	0.8934
AT5G59830			unknown protein		Potri.009G027800 [exp]	1.41	0.8991
AT2G24170			Endomembrane protein 70 protei...		Potri.018G106600 [exp]	4.47	0.8627
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.017G018500 [exp]	4.58	0.8716
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	5.19	0.8859
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	5.91	0.8825
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	8.00	0.8827
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	8.48	0.8710	CNGC.1
AT4G13970			zinc ion binding (.1)		Potri.014G054600 [exp]	11.61	0.8650
AT4G20325			unknown protein		Potri.006G280600 [exp]	12.72	0.8817

Compare expression of checked genes

Potri.008G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.