Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARA6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54840 367 / 2e-131 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G19640 222 / 4e-74 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 221 / 1e-73 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT1G16920 168 / 1e-52 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT4G18430 167 / 2e-52 AtRABA1e RAB GTPase homolog A1E (.1) AT3G15060 166 / 6e-52 AtRABA1g RAB GTPase homolog A1G (.1) AT4G39990 166 / 1e-51 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G09630 165 / 2e-51 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT5G65270 164 / 4e-51 AtRABA4a RAB GTPase homolog A4A (.1) AT5G60860 162 / 3e-50 AtRABA1f RAB GTPase homolog A1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226300 [exp] 409 / 3e-148 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.015G113000 [exp] 224 / 8e-75 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.018G079300 [exp] 223 / 2e-74 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.012G117800 [exp] 223 / 2e-74 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G054900 [exp] 223 / 2e-74 AT4G19640 270 / 4e-93 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Potri.003G004100 [exp] 167 / 2e-52 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.007G096000 [exp] 167 / 2e-52 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.019G092500 [exp] 166 / 7e-52 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.005G073000 [exp] 166 / 1e-51 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028820 [exp] 361 / 5e-129 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 358 / 3e-125 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10038334 [exp] 229 / 1e-76 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10040625 [exp] 215 / 2e-71 AT5G45130 355 / 6e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10018285 [exp] 213 / 2e-70 AT5G45130 359 / 3e-128 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10034903 [exp] 201 / 2e-65 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10035924 [exp] 168 / 1e-52 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 168 / 2e-52 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10020746 [exp] 167 / 4e-52 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029253 [exp] 165 / 2e-51 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.008G035800.2 pacid=42806864 polypeptide=Potri.008G035800.2.p locus=Potri.008G035800 ID=Potri.008G035800.2.v4.1 annot-version=v4.1 ATGGGTTGCTCCTCTTCTCTTCCAGATAGAAGTACTGGGAGGTTGGGCGGACTTAACAATTCAGAGAGTGGTGGAGTGGTTGATGCCAAAAACCTACGTG TGAAGTTGGTTTTGTTAGGGGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGTCAGTTTGATCCAACATCCAAGGTAACTATTGG AGCTTCATTTTTGTCACAAACGATAGCATTACAAGATTCTACAACAGTTAAGTTTGAGATATGGGATACTGCAGGGCAGGAAAGGTATGCTGCACTGGCA CCACTATATTATAGGGGTGCTGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAGACGTTCAACAAAGCACAATATTGGGTGAAGGAGCTACAAA AACATGGTAGCCCTGATATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCAAGAGAAGCGAGAAGTACCCACTCAAGATGGCATTGACTATGCGGA GAAGAATGGGATGTTCTTTATGGAGACATCTGCAAAAACTGCAGATAATATAAATCAACTGTTTGAGGAAATTGCTAAGCGACTTCCACGACCTTCCTCA ACTTGA
AA sequence Show only first row Show all	>Potri.008G035800.2 pacid=42806864 polypeptide=Potri.008G035800.2.p locus=Potri.008G035800 ID=Potri.008G035800.2.v4.1 annot-version=v4.1 MGCSSSLPDRSTGRLGGLNNSESGGVVDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA PLYYRGAAVAVIVYDITSPETFNKAQYWVKELQKHGSPDIVMALVGNKADLQEKREVPTQDGIDYAEKNGMFFMETSAKTADNINQLFEEIAKRLPRPSS T

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Potri.008G035800 [exp]	0	1	Pt-ARA6.2
AT5G20650		COPT5	copper transporter 5 (.1)		Potri.006G140700 [exp]	1.41	0.8260
AT1G56423			unknown protein		Potri.005G017400 [exp]	3.16	0.8317
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.001G371700 [exp]	9.79	0.7620	CBL2.2
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.008G051700 [exp]	14.49	0.7820	Pt-RAB1.11
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.002G018700 [exp]	26.40	0.7496	Pt-SKP1.2
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Potri.001G342700 [exp]	27.16	0.7894
AT1G33970			P-loop containing nucleoside t...		Potri.019G077300 [exp]	28.98	0.7449
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.009G087000 [exp]	32.58	0.7701	SMH901
AT1G76200			unknown protein		Potri.002G012700 [exp]	33.98	0.7660
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.002G105500 [exp]	35.91	0.6598

Compare expression of checked genes

Potri.008G035800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.