Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10360 907 / 0 APUM4 pumilio 4 (.1) AT2G29200 694 / 0 APUM1 pumilio 1 (.1) AT2G29140 692 / 0 APUM3 pumilio 3 (.1) AT2G29190 681 / 0 APUM2 pumilio 2 (.1.2) AT3G20250 457 / 6e-145 APUM5 pumilio 5 (.1) AT4G25880 429 / 3e-135 APUM6 pumilio 6 (.1.2.3) AT1G22240 196 / 2e-53 APUM8 pumilio 8 (.1) AT1G78160 191 / 4e-51 APUM7 pumilio 7 (.1) AT5G56510 174 / 1e-45 APUM12 pumilio 12 (.1) AT4G08840 164 / 1e-42 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G225600 [exp] 1494 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G058300 [exp] 773 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.010G201100 [exp] 771 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 765 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 758 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G004300 [exp] 476 / 2e-151 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 469 / 4e-149 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 464 / 2e-147 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 222 / 9e-61 AT5G56510 497 / 4e-168 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037976 [exp] 1155 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 1142 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10002708 [exp] 763 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 704 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 701 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 662 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 573 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 565 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10033353 [exp] 456 / 5e-145 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 456 / 7e-144 AT3G20250 880 / 0.0 pumilio 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat CL0020 [poplar] [flax] PF07990 [poplar] [flax] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Potri.008G036500.1 pacid=42807787 polypeptide=Potri.008G036500.1.p locus=Potri.008G036500 ID=Potri.008G036500.1.v4.1 annot-version=v4.1 ATGTTCACTGGGAGCAGTAACATAGAGATGCTACCGACTGTGGATGATTATCTACAAGGGGGGTTCGGTGGTAATTTAGAGGATAATTTGCAGAGCGAAC TGGAACTGATTCTACAAGCACGGCGTCGTAATCAACGCATAGAAAGAGATCTTGATAGATATAGGAGTGGCAGTGCTCCGCCTACTGTTGAGGGATCATT AAGTGCTGTGGGAAGCCTTTTTAGGAACAATAATTTGAGTGACATCAATAGTGTCACTAGTAGTAATGGTAACTGTAACAATGTGGTTTTGACCGAAGAG GAGATTCGCTCGCACCCATCTTACCTTTCGTATTACTATTCTCATGACAGCATTAACCCAAGATTGCCCCCACCTTTGTTGTCAAAGGAGGATTGGCGTG TTGCACAAAGGTTTCAGTCTTCAGGATCTATGTTTGGTGGTATTGGCAACTTGAGGAAGAATAAGGTGGTAGAAGATAGCGATAGTTCATCACTGTTTTC AATACAGCCAGGACTTTCAGTGCATAAGGTTGACATTGATTTGATAGAATCGAGTAATTCAAGTAGAAATAATGTCATCAGGAATGCTTCATCCAAGTGG CTTGATAGAGGTTCCAGTGATCCTGGATTGCAGCGCTCCAGGCTTGGTGCAAGGAGGAAAAGTTTTGCTGACATTCTACAGGAAGGACTTGATCAGCCCA CTTCCATACCAGGTCACCTATCTTCCCCAGCAAGTCATACTACTTTTTCTGATCTTCTGGATACAACTGGTGAATGTGATCCTCATCAAGTTGGGTTACA TGATGGAATGGAATCCCTGGAAGGCTTGTATTCTGGAGCAGCTACCACTGCCTTCACAGGAACTCAAAGCCACAGCAATACCTTTTCTCACTCCTTTGCA TCTGCTGTGGGCTCATCATTGTCTAGGAGTACAACACCTGAACAGCAGCTGCTTGGGAGGCCTGCTATTTCTAGTCTACATCCTGTTGGCAGCAGAGTTG GTCCTATTGAGAAGAAGAATGCTGTTGGCATGATTGTCCAAAATAATCATTCTTCTGGGATTACCGAGCTTGGGGAAATTGCCAATACGTTGTCTGGATT AAACCTTTTGAACACTAGACTCACAGATCAAGAGAGTCATACACGAGGCCAACTGCAAATGGATCTGGACAGTGAGCCACATTTTCCTTTTAACATGTCG AATGGTGCTGAGCAGGCTCTGCATCAGCAACTCATAGAAACATCCAAGGTAGAAAATCTCTCATTTTCTACCAACCATACTGATATGCCGAGAAACAACA GGATCATACCAAACAATAATGCTTCTAAGATAAGTTATAATGGGGAAGTTAGTATTCCCAGAAGAACTTCTTCTTCTACCAATCTTCACTCACAAATGAA TTCCTTGGGCCTTGGAAGTTTGGAAAGATCAAATGTTTATCATCAAAATGCAAATATTCCAATTATGGATTTCACTGGCCATGTACCTGATGATTATTCG ACACTGAAACTGAATTCAATGATCAAGAATCATTTTGACACAGGTGGTGTTGGAATTGAGAATGGTTTCAATAGACTGGGAAATCAAGTAGGGTCTGATC TTCGTTCTCCATTTCTGGACCCACGCTATACTCAGTCCTTGCAAAGAATGTTGGATTATGCAACACATGCTGTAGCTAGTTCAAGTGAGCCTCCAGTTAG AGATTATTTTGGCACTTCGGAGGGAGACTTGGACAGGATTCAAAAAGCTTATCTTGAGACATTGCTTGTTCAGCAGAAGCAACAATATGAATTGCCAATT CTAACCAAATCTGGTGGGTTGAATCAGGGATACCATAGGAATTCATCATATAATCTTAGCATGCCATATCCAGAGAACTCAGCAGTGAAATCTATGCTTC CTTCTGTTGGATCTGGGGGTTTTCAGAGTGGGCGAGCTTCACACTTAGCTTCTGTGATGAGGAGTTCGACGGGAGGATCCACTGGGTCACGGCAGTCTGA TATTGGCTGCAATGCTGAAAGAAAACAGTCTTCATCCTTTATAGATGAATTTAAGAACAACAAGACTGGTTCTTTTGAACTTTCAGACATTGTTGGTCAT GTTGTTGAATTCAGCACAGATCAGTATGGAAGTCGGTTTATCCAGCAGAAACTAGAAACTGCTTCAGTTGAAGAGACGAACAAGATATTCCCTGAGATTA TTCCTCATGCTCTTACCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAGTTTCTTGATCAAGGTACAGAAAGTCAAAGAATAGAGTTAGCCAG TCAGCTTACTGGTCATGTTTTACCTCTCAGTCTTCAAATGTATGGGTGCAGAGTAATCCAGAAGGCTTTGGAGGTGATTGACGTGGATCGACAGACTCAA ATGGTGGCAGAGCTAGATGGCTCTGTCATGAAATGTATTCGTGATCAGAATGGTAATCATGTTATTCAGAAGTGTATAGAGTGTGTTCCAGGAGATCGAA TACAGTTCATCACCTCAGCTTTCTATGGGCAAGTTGTGGCCCTTTCCACCCACCCTTATGGTTGCCGTGTTATCCAGAGGGTCTTGGAGCATTGTAAGGA CATGAATACACAGCAAGTTATTATGGATGAAATTATGCAGTCTGTATGCGCTTTGGCACAAGATCAATATGGAAATTATGTCATTCAGCATGTCCTGGAG CATGGTAAGCCACAACAACGATCTGTTATTATTAGAAAGCTTGCGGGACAGATTGTTTTGATGAGTCAGCAGAAATTTGCTTCTAATGTTGTGGAGAAGT GCTTGACATTTGGTGGCCCTGATGAGCGCCAGCTTTTGGTGAATGAGATGCTTGGTTCCACTGATGAAAATGAGCCCTTGCAGGCTATGATGAAAGATCC GTTTGGAAATTATGTTGTACAAAAGGTTCTTGAGACCTGCGATGATCGAAGTCTAGAGTTAATTCTTTCTCGCATTAGGATTCATTTGAGTGCCCTGAAG AGATACACTTATGGTAAACATATTGTTTCGCGTGTTGAGAAGCTCATCACAACTGGAGAAAGGCGCATACGGTTGTCATTCGCAGTCTCCTCCTAA
AA sequence Show only first row Show all	>Potri.008G036500.1 pacid=42807787 polypeptide=Potri.008G036500.1.p locus=Potri.008G036500 ID=Potri.008G036500.1.v4.1 annot-version=v4.1 MFTGSSNIEMLPTVDDYLQGGFGGNLEDNLQSELELILQARRRNQRIERDLDRYRSGSAPPTVEGSLSAVGSLFRNNNLSDINSVTSSNGNCNNVVLTEE EIRSHPSYLSYYYSHDSINPRLPPPLLSKEDWRVAQRFQSSGSMFGGIGNLRKNKVVEDSDSSSLFSIQPGLSVHKVDIDLIESSNSSRNNVIRNASSKW LDRGSSDPGLQRSRLGARRKSFADILQEGLDQPTSIPGHLSSPASHTTFSDLLDTTGECDPHQVGLHDGMESLEGLYSGAATTAFTGTQSHSNTFSHSFA SAVGSSLSRSTTPEQQLLGRPAISSLHPVGSRVGPIEKKNAVGMIVQNNHSSGITELGEIANTLSGLNLLNTRLTDQESHTRGQLQMDLDSEPHFPFNMS NGAEQALHQQLIETSKVENLSFSTNHTDMPRNNRIIPNNNASKISYNGEVSIPRRTSSSTNLHSQMNSLGLGSLERSNVYHQNANIPIMDFTGHVPDDYS TLKLNSMIKNHFDTGGVGIENGFNRLGNQVGSDLRSPFLDPRYTQSLQRMLDYATHAVASSSEPPVRDYFGTSEGDLDRIQKAYLETLLVQQKQQYELPI LTKSGGLNQGYHRNSSYNLSMPYPENSAVKSMLPSVGSGGFQSGRASHLASVMRSSTGGSTGSRQSDIGCNAERKQSSSFIDEFKNNKTGSFELSDIVGH VVEFSTDQYGSRFIQQKLETASVEETNKIFPEIIPHALTLMTDVFGNYVIQKFLDQGTESQRIELASQLTGHVLPLSLQMYGCRVIQKALEVIDVDRQTQ MVAELDGSVMKCIRDQNGNHVIQKCIECVPGDRIQFITSAFYGQVVALSTHPYGCRVIQRVLEHCKDMNTQQVIMDEIMQSVCALAQDQYGNYVIQHVLE HGKPQQRSVIIRKLAGQIVLMSQQKFASNVVEKCLTFGGPDERQLLVNEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDRSLELILSRIRIHLSALK RYTYGKHIVSRVEKLITTGERRIRLSFAVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10360		APUM4	pumilio 4 (.1)		Potri.008G036500 [exp]	0	1
AT1G50730			unknown protein		Potri.001G356700 [exp]	18.73	0.7030
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	25.63	0.6795
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	31.63	0.6719
AT5G47020			unknown protein		Potri.003G086200 [exp]	57.82	0.6688
AT3G10360		APUM4	pumilio 4 (.1)		Potri.010G225600 [exp]	60.96	0.5844
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	72.66	0.6556	Pt-DREB2.1
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	75.77	0.6479
AT2G38420			Pentatricopeptide repeat (PPR)...		Potri.006G106400 [exp]	82.75	0.6074
AT4G00090			Transducin/WD40 repeat-like su...		Potri.014G069400 [exp]	83.66	0.6467
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	88.43	0.6367

Compare expression of checked genes

Potri.008G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.